Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1209 428 8e-115 seq561 340 3e-88 >seq1209 Length=374226 Score = 428 bits (474), Expect = 8e-115 Identities = 1240/1886 (66%), Gaps = 63/1886 (3%) Strand=Plus/Minus Query 243741 TGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTGAGTC 243800 ||||||||| ||||||| | || |||| ||| | |||||||||||||| |||||||| | Sbjct 94537 TGAACTGGATGGGTGCGGCTGCTGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGAC 94478 Query 243801 CACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGGTCGT 243860 | |||| | || ||||||| || | ||| ||| || ||| || Sbjct 94477 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATG--GA----TGGCTC-- 94426 Query 243861 CCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTCTGCG 243919 ||||| || ||| || ||||| |||||||| ||||| |||| || || || Sbjct 94425 --TCGCATGTG--GATGTTAAGTGACTGAGACTGGTCGATGAAGG-CGCCACGGTCAGCA 94371 Query 243920 GCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAG 243978 ||||| | | ||||| |||||| || || | | |||||||| | | ||||| Sbjct 94370 GCCATCTGCACAATTGTCCT-CTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGAT 94312 Query 243979 GTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCG 244038 | | |||| | || |||||||| || || | | | |||||| || | Sbjct 94311 ATCAGCCGGGATGCTGGGAATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTCTT 94252 Query 244039 CATGTTATCGTTCCACAGGCCCAAGCGCTC-CAGCGCCTCGACCAGGTGCCTGTTCACCA 244097 |||| || ||||| ||| |||| || ||| || || || ||| || | Sbjct 94251 CATGGCCTCAGACCACAAGCC-AAGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGA 94193 Query 244098 CCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGC 244157 |||| ||||| || | ||||| || |||||||||| |||| | | ||||||| || Sbjct 94192 CCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGC 94133 Query 244158 TCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGAC 244217 ||| |||||||||| ||||||| ||| ||||| |||||||| | || || || | Sbjct 94132 ACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGC 94073 Query 244218 TGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCG 244277 |||| | | || | || ||| | |||| ||| ||||||||||| | | | Sbjct 94072 TGTTGCGAATACCAGTCTCCTTGATCTTGGCCTTGAGGGCGTCCCAGTCCCACAGGTCAG 94013 Query 244278 AGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGC 244337 | ||| |||| | ||||||||| ||||| || | |||| ||||||| Sbjct 94012 A-AGGC--------TTGACGTTCCACATGTCGAACTGGAGGATGCCCTGCGACACGGGGC 93962 Query 244338 TGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCA----GCTTACAGCTCTCGTCG 244393 |||||||||| ||| ||| | || || || ||| | ||| ||| | | Sbjct 93961 TGCCCTCGTATGTCTTGTATGTGCCTTCCACCTTGGCAATGTCGCTGGATGCTGT----G 93906 Query 244394 AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAG 244453 || || || | |||||||||||||||||| |||||||| || || |||| | | | Sbjct 93905 AGAGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGCGCCTCGGGGGAA 93846 Query 244454 GTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATG 244513 |||||| || | | || ||| | ||||| || ||||| ||||||| || || Sbjct 93845 TCGAAGGGCATACGAAGAGCCAAGAATGCATCGGCAAGACCCTGAACGCCGACACCAATA 93786 Query 244514 GGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGAT 244572 |||| ||||||| ||||| | | ||| || | ||| ||||| |||| | ||||| Sbjct 93785 GGTCGGTGTCGCATGTTGCTGTTGTATGCCTCCTT-CACCGGGTAGTGGTTGACATCGAT 93727 Query 244573 CACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAAAGTCGT 244631 | |||||| | ||||||| || || | || ||| ||| |||| |||| |||| || Sbjct 93726 AATCTTGTTCAAGTTGCGGACGA-CAACCTGAGTGACCTCGTGCAGCTGCTGGAAGTTGT 93668 Query 244632 ACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCA 244691 | || | || | ||| | || | || | || | | |||| Sbjct 93667 AGCAGTTGTTGTCATAATCGACGT--ATGCCGGCAGA----------GCAATGGAAGCCA 93620 Query 244692 GGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTAC 244751 |||||||||| || ||||| |||| | | ||||| || |||||||||||||||||| Sbjct 93619 GGTTGCAGACAGCGACCTCATCCGGGGCCGAGTACTCGATGATCTCGGTGCAGAGGTTAG 93560 Query 244752 TGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGA 244811 || |||||||||||||| || || ||| ||| ||| | || ||||| | Sbjct 93559 AGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTCCGGTTTGCGTGATCTTTGTACA 93500 Query 244812 GCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAG 244871 |||| ||||| || |||||| ||| || | |||| | | ||| || | | | Sbjct 93499 GCATAAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCACAGCTTCTGGG 93440 Query 244872 CCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACT 244931 |||| | ||| | || | |||||| |||||| ||| |||||||| |||| Sbjct 93439 CCTTCAGTGTCTTACGGCCGCGGCCCTCCTGCTCGTACTTCTCGTAGAGGGCCTCAAACT 93380 Query 244932 CGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGC 244991 | || || ||| | ||||| |||||| |||||||| || |||| || | Sbjct 93379 CCTCACCGTAGCAGTCGGCGAGGCCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCAC 93320 Query 244992 CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCC 245051 || | || ||||| || |||||| || || ||||||||||| || |||| ||||| | Sbjct 93319 CGTTCTTCTCGACCCGCTTCATGAACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCAC 93260 Query 245052 TGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | ||| | ||| ||| || |||||||| ||| || | || || ||||| || Sbjct 93259 --GAGCTCGGATCTCCTCCTTACCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATC 93202 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 ||||||| ||||| | ||| | ||||| ||| ||||| ||||||||||| |||||||| Sbjct 93201 AGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTC 93142 Query 245170 CACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGC 245228 | ||| || | |||||||| ||||| | || |||||||| ||| | Sbjct 93141 GA-CATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGAGTGATGCCGTTGGAGGTAC 93083 Query 245229 CGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTC 245288 |||||||||| |||||| | ||| || | | || | || | || ||| | | Sbjct 93082 CGTTGGTGCCAGCGATGTACGAGCCGGTGGCACGGATACGGTGGACGTTCAGGCCGATGC 93023 Query 245289 CGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGC 245348 | ||||| ||||||||| | ||| || |||||| ||||| |||||||| |||| Sbjct 93022 CTCCGGCCATCTTGGAGATCATGGCACATGTCTTGAGTGTGTCATAGATGCCCTCGATGC 92963 Query 245349 TGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGT 245408 ||||| |||||||| || || ||||| || ||||||||||||| ||| ||| | | Sbjct 92962 TGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGGGGCTGGGGAGTGCCAGCAT 92903 Query 245409 TGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGA 245468 |||| || ||||| ||| ||||| ||| | | | || | || ||| |||| || Sbjct 92902 TGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGACATGAGGTTGTAGGTCTCGA 92843 Query 245469 GCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGG 245528 | || | | ||||| ||| | || | ||||| ||||||| | Sbjct 92842 TGACCCTCTCCACATCATCGCCCCAGATGCCAACTGCAACACGCATGATCATGTGCTGTG 92783 Query 245529 GCGTCTCGATGGGT---CCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGA 245585 || ||||| | || ||| | ||| || | ||||||||||||||| ||||||| Sbjct 92782 GCCGCTCGACAACTTTGCCGTCGAG---CTTCAGGAGGTAGGAGCGCTCGAGGGTCTTGA 92726 Query 245586 ACCCAAAGTACGAGTAGCCAAAGTCG 245611 |||| ||||| |||||| |||||| Sbjct 92725 ACCCGAAGTATTGGTAGCCGAAGTCG 92700 >seq561 Length=46336 Score = 340 bits (376), Expect = 3e-88 Identities = 390/516 (76%), Gaps = 9/516 (2%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| |||||||| || || |||||| || | ||| | || Sbjct 8019 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGAGTCCACC 8078 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 | | | || | ||||| ||||| | ||||||||||||||||||||| ||||||||| Sbjct 8079 TATGCCCAGCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCCTTC 8138 Query 42753 GCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||||||||||||||||||||| || || || ||||| || |||||||| || ||||| Sbjct 8139 GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTC-ATGCCTGGTCTCACCTTTTCCAACGA 8197 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 || ||| | || ||||| ||||| | ||||| |||||||| ||||||||| || Sbjct 8198 GCTTATCTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCG---CA 8254 Query 42872 CCTCAGGCACAAGCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGA 42930 ||||||| || |||| | ||| |||| |||| || ||||||||| |||||||| || Sbjct 8255 CCTCAGGAAC-CGCCCAAGCAAGCAGCGCGTCCAGGACATCATCACTGAGGCCGTCATGA 8313 Query 42931 TCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACC 42990 |||||||||| ||||| || || | || || ||||| ||||||||||| | ||| Sbjct 8314 TCGAGAAGGAATTCCTGACCGAGGCCCTTCCATGCGCCCTGCTCGGCATGAACTCCAACC 8373 Query 42991 TCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC-AGC 43049 ||||| ||||||| ||| ||||||||||| |||||| | |||| | || Sbjct 8374 TCATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCCTGGTCGCTCTGGGCAACGAGA 8433 Query 43050 CGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAG 43109 | | ||||| || || |||||||||||| |||||||||||||| | | |||||| Sbjct 8434 AG-GTGTACAAGTCGTCGAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAG 8492 Query 43110 ACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| ||||||||||| |||| ||||||||| Sbjct 8493 ACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 8528 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 42418 ACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGT 42477 |||| || |||||||||||||| || || ||||| ||||| |||||||||| | | Sbjct 7745 ACATCCTCGCCTTCTTCGCCGCTTCAGATGGCATCGTCAACGAGAACCTGGTGGAGCGCT 7804 Query 42478 TCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 ||| ||||| || | |||||| || |||||||||||||||||||| || | Sbjct 7805 TCAGCGGCGAGGTCCAAATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGATCATGATGG 7864 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCCCG 42594 ||||| | ||||| ||| ||| | |||||| |||| |||||| ||| |||| Sbjct 7865 AGAACATCCACTCCGAGACGTATTC---TTTGCTCATTGACACCTACATCAAGGAGCCCG 7921 Query 42595 TCGAGCG 42601 | |||| Sbjct 7922 CCCAGCG 7928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944317114266960