Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20]
1,871 sequences; 55,029,878 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1489 149 1e-30
seq427 113 1e-19
seq28 107 5e-18
seq561 104 6e-17
>seq1489
Length=43664
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || ||||| | ||| ||||| || | || ||| || ||||| || ||||||| |
Sbjct 22890 CCGCCACGGAGACGAAGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 22831
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | ||| || || ||||||||||| ||||| ||| | |||
Sbjct 22830 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCAGGGGGG 22771
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || || | || ||||| || |||| ||| || || ||
Sbjct 22770 ATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACC 22711
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 22710 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22664
Score = 131 bits (144), Expect = 4e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288245 GTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGG 288304
|||| || ||||| | || || | || | ||| || || ||||| || ||||| |
Sbjct 23348 GTCCGCCACGGAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAG 23289
Query 288305 CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364
||| || || |||||||| | ||||| || ||||| || |||||||| || ||
Sbjct 23288 AGAGGGTCCGGCCGTCTTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTG 23229
Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424
|||| || || || ||||| || || | || ||||| || || | || ||| || |
Sbjct 23228 GGATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCA 23169
Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
| |||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct 23168 CCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACAAAGATCTGCATT 23119
Score = 123 bits (136), Expect = 6e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305
|||||||||||| | |||||||| || | || || || || || || |||||||
Sbjct 23119 TCCACCGCGGAGGCGGAGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 23060
Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365
|| || || || || || | || ||||| || ||||| || ||||| || | ||
Sbjct 23059 CAGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGG 23000
Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425
||| || || || ||||| || || | || ||||| || |||| ||| || || ||
Sbjct 22999 GATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGAC 22940
Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct 22939 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22892
>seq427
Length=47822
Score = 113 bits (124), Expect = 1e-19
Identities = 166/234 (71%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || ||||| || | ||| || || ||||| || ||||||| |
Sbjct 19397 CCACCACGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19338
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363
|| ||||| || || || | || || || ||||||||||| ||||| || |||
Sbjct 19337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTG---GTCTGGG 19281
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || |||||||| || | || || || || || | ||| || ||
Sbjct 19280 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 19221
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || || ||||| ||||| || || || ||||| ||||| |||||||| |||
Sbjct 19220 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATG 19167
>seq28
Length=192849
Score = 107 bits (118), Expect = 5e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| || ||||||| ||| ||||| || || || | || || || |||||||||
Sbjct 42565 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 42506
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
|| ||||| || | ||||| || || || |||||||| |||| || ||||| ||
Sbjct 42505 AGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCG 42446
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | || || || || ||||| ||||| ||||| || ||||| ||||| |||||
Sbjct 42445 ATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 42387
>seq561
Length=46336
Score = 104 bits (114), Expect = 6e-17
Identities = 128/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209
|| |||| ||||| || | |||||||| || || || || ||||| || || || ||
Sbjct 8353 TGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCC 8412
Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269
| || || || | ||||| |||||||| ||| ||| ||||||| ||| |||||
Sbjct 8413 TGGTCGCTCTGGGCAACGAGAAGGTGTACAAGTCGTCGAACCCCTTCGACTTCATGGAGA 8472
Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324
|| || |||| || ||||| ||||||||||| ||||||||| | ||||| ||
Sbjct 8473 ACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 8527
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179626121103538
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |