Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1489 149 1e-30 seq427 113 1e-19 seq28 107 5e-18 seq561 104 6e-17 >seq1489 Length=43664 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| ||||| || | || ||| || ||||| || ||||||| | Sbjct 22890 CCGCCACGGAGACGAAGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAG 22831 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | ||| || || ||||||||||| ||||| ||| | ||| Sbjct 22830 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCAGGGGGG 22771 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || || | || ||||| || |||| ||| || || || Sbjct 22770 ATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACC 22711 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 22710 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22664 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288245 GTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGG 288304 |||| || ||||| | || || | || | ||| || || ||||| || ||||| | Sbjct 23348 GTCCGCCACGGAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAG 23289 Query 288305 CGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364 ||| || || |||||||| | ||||| || ||||| || |||||||| || || Sbjct 23288 AGAGGGTCCGGCCGTCTTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTG 23229 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTA 288424 |||| || || || ||||| || || | || ||||| || || | || ||| || | Sbjct 23228 GGATGCCCTCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCA 23169 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | |||||||||||||||||||| ||||| |||||||| || ||||||||| Sbjct 23168 CCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACAAAGATCTGCATT 23119 Score = 123 bits (136), Expect = 6e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | |||||||| || | || || || || || || ||||||| Sbjct 23119 TCCACCGCGGAGGCGGAGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 23060 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || || || || | || ||||| || ||||| || ||||| || | || Sbjct 23059 CAGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGG 23000 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || ||||| || || | || ||||| || |||| ||| || || || Sbjct 22999 GATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGAC 22940 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct 22939 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22892 >seq427 Length=47822 Score = 113 bits (124), Expect = 1e-19 Identities = 166/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| || | ||| || || ||||| || ||||||| | Sbjct 19397 CCACCACGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19338 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || || || | || || || ||||||||||| ||||| || ||| Sbjct 19337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTG---GTCTGGG 19281 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || | || || || || || | ||| || || Sbjct 19280 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCC 19221 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || || ||||| ||||| || || || ||||| ||||| |||||||| ||| Sbjct 19220 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATG 19167 >seq28 Length=192849 Score = 107 bits (118), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| ||| ||||| || || || | || || || ||||||||| Sbjct 42565 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 42506 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 || ||||| || | ||||| || || || |||||||| |||| || ||||| || Sbjct 42505 AGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCG 42446 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || || || ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 42445 ATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 42387 >seq561 Length=46336 Score = 104 bits (114), Expect = 6e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 269150 TGATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCT 269209 || |||| ||||| || | |||||||| || || || || ||||| || || || || Sbjct 8353 TGCTCGGCATGAACTCCAACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCC 8412 Query 269210 TCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAAC 269269 | || || || | ||||| |||||||| ||| ||| ||||||| ||| ||||| Sbjct 8413 TGGTCGCTCTGGGCAACGAGAAGGTGTACAAGTCGTCGAACCCCTTCGACTTCATGGAGA 8472 Query 269270 TAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 || || |||| || ||||| ||||||||||| ||||||||| | ||||| || Sbjct 8473 ACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 8527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179626121103538