Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1209 208 8e-49 seq561 122 9e-23 seq1489 105 7e-18 seq427 91.5 1e-13 >seq1209 Length=374226 Score = 208 bits (230), Expect = 8e-49 Identities = 987/1544 (64%), Gaps = 37/1544 (2%) Strand=Plus/Minus Query 153028 GGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAG 153087 ||||||| || || |||||||| || | ||| |||| | || | ||| || | | Sbjct 94201 GGTTGACGACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATG 94142 Query 153088 GTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCA 153147 | || ||| | ||||| ||||| || || || | |||| ||| || |||||| |||| Sbjct 94141 GCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCA 94082 Query 153148 CCAACAAAGAATTCCGCAAGCC-GTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 |||||| || || | || || || || | | | |||| | || | ||| ||| Sbjct 94081 TCAACAAGCTGTTGCGAATACCAGTCTCCTTGA-TCTTGGCCTTGAGGGCGTCCCAGTCC 94023 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA--ACACTCCTCGACTGGCGG 153264 ||||| | || || | |||||||||||||| |||| | | | | |||| ||| Sbjct 94022 CACAGGTCAGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATGCCCTGCGAC--ACGG 93965 Query 153265 GACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGA 153324 | ||||| | | || |||| |||| || | ||| | |||| | || || Sbjct 93964 GGCTGCCCTCGTATGTCTTGTATGTGCCTTCCACCTTGGCAATGTCGCTGGATGCTGTGA 93905 Query 153325 GCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCT 153384 | || ||| ||| ||||| ||| |||||| || || || | ||| || | | Sbjct 93904 GAGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGCGCCTCGGGGGAAT 93845 Query 153385 CGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGG 153444 || | ||||| || || || || || ||||| |||||||| | ||||| || || | Sbjct 93844 CGAAGGGCATACGAAGAGCCAAGAATGCATCGGCAAGACCCTGAACGCCGACACCAATAG 93785 Query 153445 GTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGATTGCGATCGATA 153503 |||| || | ||||||| || ||| | | || ||||| ||| ||||||| Sbjct 93784 GTCGGTGTCGCATGTTGCTGTTGTATGC-CTCCTTCACCGGGTAGTGGTTGACATCGATA 93726 Query 153504 ATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAG 153563 || ||||| | |||||| || || || | ||| | | | | || | || ||| | ||| Sbjct 93725 ATCTTGTTCAAGTTGCGGACGACAACCTGAGTGACCTCGTGCAGCTGCTGGAAGTTGTAG 93666 Query 153564 --GTCATT-TCGTCGACG-CGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGAC 153619 || || || | || |||| || || || ||||| || ||||| || ||||| Sbjct 93665 CAGTTGTTGTCATAATCGACGTATGC--CG--GCAGAGCAATGGAAGCCAGGTTGCAGAC 93610 Query 153620 GGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTT---GCTGCATTT 153676 || ||| || | | | ||||| | |||||||| ||||||||| ||||| Sbjct 93609 AGCGACCTCATCCGGGGCCGAGTACTCGATGATCTCGGTGCAGAGGTTAGAGCTGC---G 93553 Query 153677 TATGACGCCCAAATTTTGCTGATTGCTTTTGC-GATTGCACGCGTCTTTGAAGAGCATGT 153735 ||| ||||| || | ||| ||||| || | | |||| | |||||| | ||||| Sbjct 93552 GATGGTGCCCAGGTTCTTCTGGTTGCTCTTCCGGTTTGCGTG-ATCTTTGTACAGCATAA 93494 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCTC 153792 | || || |||||| || | || | ||| | ||| ||| | ||| || Sbjct 93493 AGGGGTTACCAGTCTCGGTCTGAGCCTCAAGGATGGCATACC---ACAGCTTCTGGGCCT 93437 Query 153793 GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGT 153852 || || || ||||||||| |||||| |||||| || ||||||||| | Sbjct 93436 TCAGTGTCTTACGGCCGCGGCCCTCCTGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCT 93377 Query 153853 CGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT 153912 | |||||||||||||||||||| || |||| | || ||||| || | ||| | ||| Sbjct 93376 CACCGTAGCAGTCGGCGAGGCCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGT 93317 Query 153913 CGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCG 153972 | ||| || |||||||||||| || | |||||| || | ||||| || | Sbjct 93316 TCTTCTCGACCCGCTTCATGAACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAG 93257 Query 153973 CCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGA-GCACGCTATAGATGTCGGCG 154031 | | |||||| || ||| ||| | || | || | | ||| || ||| Sbjct 93256 CTCGGATCTCCTCCTTACCGTGGTTCTTCCGCAGGTCGAGGAACTCGA-AGACATCAGCG 93198 Query 154032 TGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGACG 154088 ||||| || || | ||| | || | |||||| |||| || || ||||| ||||| Sbjct 93197 TGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACA 93138 Query 154089 TGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTG 154148 | || | | ||||||||||| |||| |||||| | |||| | | ||| |||||| Sbjct 93137 TAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTG 93078 Query 154149 GTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCG 154208 || | ||| | |||| ||| || | | || ||||| | ||| ||||| ||| Sbjct 93077 GTGCCAGCGATGTACGAGCCGGTGGCACGGATACGGTGGACGTTCAGGCCGATGCCTCCG 93018 Query 154209 CCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATC 154267 | ||| || || || || ||| || || |||||||| |||||||| || Sbjct 93017 GCCATCTTGGAGATCATGGCACATGTC-TTGAGTGTGTCATAGATGCCCTCGATGCTGTC 92959 Query 154268 GTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAA 154327 || | | ||| | ||| || || ||| || || | | || || || || Sbjct 92958 CTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAA 92899 Query 154328 GAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGC 154387 || ||||| || || || || | || | ||| | | ||| || |||||| | Sbjct 92898 TAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGACATGAGGTTGTAGGTCTCGATGAC 92839 Query 154388 GTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACG 154447 || | ||||||||| ||||| | || || ||||||| ||||||||| || || Sbjct 92838 CCTCTCCACATCATCGCCCCAGATGCCAACTGCAACACGCATGATCATGTGCTGTGGCCG 92779 Query 154448 TTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAACCGAA 154507 ||| | ||| | ||| | ||||| ||| || |||||||| ||| | ||||| Sbjct 92778 CTCGACAACTTTGCCGTCGAGCTTCAGGAGGTAGGAGCGCTCGAGGGTCTTGAACCCGAA 92719 Query 154508 ATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGA 154551 || | ||| | || || | |||| | ||||||| |||| Sbjct 92718 GTATTGGTAGCCGAAGTCGCGATCATAGACAATGGCCGAGTCGA 92675 >seq561 Length=46336 Score = 122 bits (134), Expect = 9e-23 Identities = 346/519 (67%), Gaps = 17/519 (3%) Strand=Plus/Plus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG-- 52383 || || ||| | ||||| ||||| | ||||| ||||||||||| || ||| || Sbjct 8016 GTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAG---GACCGCGAG 8072 Query 52384 -CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGC 52442 |||| ||| ||||| |||| |||||||| ||||||||| | || || |||| Sbjct 8073 TCCACCTATGCCCAGCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGC 8132 Query 52443 AGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGC 52502 ||| ||| ||||||| | | || | | ||| | ||||| || || || || | Sbjct 8133 GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTTCC 8192 Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAA 52561 |||||| | || || || || || || |||||||| ||||| || ||||| || | Sbjct 8193 AACGAGCTTATCTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCG 8252 Query 52562 GACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 || | |||| || | | | | | || ||| | ||| ||| ||||| || Sbjct 8253 CACCTCAGGAACCGCCCAA--GCAAGCAG-CGCG-TCCAGGACATCATCACTGAGGCCGT 8308 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681 ||||| ||||| || | || | || || || || ||||| ||||||||| | Sbjct 8309 CATGATCGAGAAGGAATTCCTGACCGAGGCCCTTCCATGCGCCCTGCTCGGCATGAACTC 8368 Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTC-GGGC 52740 | |||| ||||||| ||||| || || || || || |||| |||| |||| Sbjct 8369 CAACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCCTGGT--CGCTCTGGGC 8426 Query 52741 AGCCA-AAGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 | | | ||| | ||| | ||| || || || || || ||| | ||||| || || | Sbjct 8427 AACGAGAAGGTGTACAAGTCGTCG-AACCCCTTCGACTTCATGGAGAACATCTCCCTCGG 8485 Query 52799 GGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||||||| ||||||||||| ||||| || || Sbjct 8486 TGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 8524 >seq1489 Length=43664 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||||| || || || | | |||||||| || ||||||||||| Sbjct 23346 CCGCCACGGAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAG 23287 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || || ||||| || | | || |||||||| ||||| || || Sbjct 23286 AGGGTCCGGCCGTCTTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGG 23227 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | |||| || | |||| | | ||||| | |||||||| Sbjct 23226 ATGCCCTCCTTGTCC-TGAATCTTTGACTTGACGTTGT-CAATCGTGTCCGACGACTCCA 23169 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| ||| | ||| || || ||||| || || ||||| |||||||| Sbjct 23168 CCTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACAAAGATCTGCAT 23120 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || ||| || |||||||| || || || | | Sbjct 23085 GACTCCTTCTGAATGTTGTAGTCGGACAGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCA 23026 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || ||||| ||||| || || || || || ||||| ||| | || | |||| Sbjct 23025 AAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC-CTGAATCTTGGACTTTAC 22967 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | || || | ||||| ||||||| || | || || || || || || || Sbjct 22966 GTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTT 22907 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 22906 GACGAAGATCTGCAT 22892 >seq427 Length=47822 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 19397 CCACCACGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19338 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| |||| || ||||| ||||| || || Sbjct 19337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19278 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | ||||| | | |||||||| |||||||| Sbjct 19277 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT-CGATGGTGTCGGAAGACTCCAC 19219 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || || || || || || || || || ||||||||| Sbjct 19218 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATG 19170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496250793663120