Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1489 136 9e-27 seq427 123 6e-23 seq28 96.9 8e-15 >seq1489 Length=43664 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| || ||||||||||| |||| ||||||||||| | ||| Sbjct 23340 CGGAGACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTC 23281 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||||||| || || ||||| ||||||||||||||||| || || || Sbjct 23280 CGGCCGTCTTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGGATGCCC 23221 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| ||| ||| || | ||||| | | || || || | | Sbjct 23220 TCCTTGTCCTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCACCTCGAGC 23161 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || ||||| || || Sbjct 23160 GTGATCGTCTTCCCCGTCAGGGTCTTGACAAAGATCTG 23123 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| || | ||||||||| | || ||||| ||||| Sbjct 23103 AGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTCCGGCCATCC 23044 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || |||||||| ||||||||||| || || || || ||| Sbjct 23043 TCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 22984 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| || || | | || || || | ||||| ||| Sbjct 22983 TGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTC 22924 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 22923 TTGCCGGTGAGGGTCTTGACGAAGATCTG 22895 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || || ||||| |||| ||||||||| | | || | || || Sbjct 22875 AGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 22816 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| || |||||||| || || || || || ||| Sbjct 22815 TCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 22756 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| || || | | || || || | ||||| ||| Sbjct 22755 TGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTC 22696 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || Sbjct 22695 TTGCCGGTGAGGGTCTTGACGAAGATCTG 22667 >seq427 Length=47822 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| || |||||||| |||| ||||||||| | | || Sbjct 19391 CGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 19332 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| || ||||||||||| || || || Sbjct 19331 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCC 19272 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| |||||| | | || || || | Sbjct 19271 TCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGG 19212 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || ||||| || || || Sbjct 19211 GTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTG 19174 >seq28 Length=192849 Score = 96.9 bits (106), Expect = 8e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||| | | || | ||||| || |||||||| |||||||||| Sbjct 42567 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 42508 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | || ||||||||||| || || || || ||||| ||||| ||| ||| | Sbjct 42507 TCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGT 42448 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| |||||| | | || || || | ||||| ||||| ||||| || || ||||| | Sbjct 42447 CGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 42388 Query 199620 A 199620 | Sbjct 42387 A 42387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178893338670357