Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq561 163 3e-35 seq1489 149 6e-31 seq427 131 2e-25 seq28 118 1e-21 >seq561 Length=46336 Score = 163 bits (180), Expect = 3e-35 Identities = 330/482 (68%), Gaps = 12/482 (2%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | ||| ||| | ||| || || |||||||| Sbjct 8509 TTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTC 8450 Query 132685 GCTGTGTTGTAGTGCTT---GGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||||| ||| | |||| ||| |||| || || | |||||| |||||| Sbjct 8449 GACGACTTGTACACCTTCTCGTTGCC---CAGAGCGACCAGGAGGCGGTCGGCGACGAAC 8393 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 || ||||| ||| |||| | | | || | || ||||| |||| || || || || Sbjct 8392 TCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGCGCAT-GGAAGGGCCTC 8334 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 ||| || || | |||||| ||| || || |||| ||| ||| |||||| | Sbjct 8333 GGTCAGGAATTCCTTCTCGATCATGACGGCCTCAGTGATGATGTCCTGGACGCGCTGCTT 8274 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| || || | | | ||| ||||| || ||| || |||||| |||| |||||| Sbjct 8273 GCTTGGGCGGTTCCTGAGGTGCGAGAACAGCAGGCAGGCGAAGTCGGTGTGCAGGCCCTC 8214 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | || || || |||||| || || | || ||||||||||| || || ||||| Sbjct 8213 ATCACGAGAGATAAGCTCGTTGGAAAAGGTGAGACCAGGCATGAGGCCACGCTTCTTGAG 8154 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||| || |||| |||||| ||| ||||||| |||||||||||| ||||| || || Sbjct 8153 CCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATGCCCTCGACGGCAGCGAAGGCGAC 8094 Query 133041 CAGGCGCTCGCCGAACGTGG-CT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCC 133098 |||||||| | | | |||| || | | ||| |||||| ||| ||||| |||||| Sbjct 8093 CAGGCGCTGGGCATAGGTGGACTCGCGGTCCTG--GATCCACTTCAGAGCCCAGTCGGCC 8036 Query 133099 TT 133100 || Sbjct 8035 TT 8034 Score = 127 bits (140), Expect = 2e-24 Identities = 194/276 (70%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| |||||| | || ||||| | ||||||||| ||| || || Sbjct 7908 GTAGGTGTCAATGAGCAAAGAATACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 7849 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 |||||| ||||| || ||||| | || || || ||| ||||| ||||| || Sbjct 7848 GCCGTAGAAGCAACGGGCCTCAGGGATTTGGACCTCGCCGCTGAAGCGCTCCACCAGGTT 7789 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||||||||| || |||||||| ||||| || | ||| || ||| | || Sbjct 7788 CTCGTTGACGATGCCATCTGAAGCGGCGAAGAAGGCGAGGATGTGGGAGACGAAGTAACG 7729 Query 133347 CTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | ||| ||| ||| | ||||||| | |||||||| || || | ||| || Sbjct 7728 CTCATCATCGGTCAGGCGGTTGCTCCAGTCGTGGAGATCCTTGGAGAGATCGATCTCTTC 7669 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||||||| || || ||||| || |||||||| Sbjct 7668 AGCGGTCCAGAAAGAAGCCTCATGCTTCTTGTACAT 7633 >seq1489 Length=43664 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || || ||||| || || ||||| |||| || ||| | | Sbjct 23119 AATGCAGATCTTTGTCAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTGGAGTCGTC 23178 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || |||| | || ||| || | ||||| ||||| || || | |||| Sbjct 23179 GGACACGATTGACAACG-TCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCACCAGACC 23237 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| ||| |||||||||||||| |||| || |||||| ||||||| Sbjct 23238 AGCAGCGTCTCATTTTCGCTGGCAAACAGCTGGAAGACGGCCGGACCCTCTCTGACTACA 23297 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||||||||| |||||||||||| | | ||||| Sbjct 23298 ACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTCCGTGGCGG 23346 Score = 123 bits (136), Expect = 2e-23 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| || | Sbjct 22664 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 22723 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | |||| ||||| || || | ||||| ||||| || ||| | || | Sbjct 22724 GATACTATCGACAACG--TAAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATC 22781 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||| ||||| || || || |||| ||||||||| |||||||| Sbjct 22782 AGCAGCGCCTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACA 22841 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| |||||| | || || || | || || ||| | | ||||| Sbjct 22842 ACATCCAGAAGGAATCAACCCTCCACCTCGTCCTTCGTCTCCGTGGCGG 22890 Score = 104 bits (114), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| |||||| || | Sbjct 22892 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 22951 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | |||| ||||| || || | ||||| ||||| || ||| | |||| Sbjct 22952 GATACTATCGACAACG--TAAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACC 23009 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || || || ||||| || || | || || || |||||||| Sbjct 23010 AGCAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGGACTCTGTCCGACTACA 23069 Query 38422 ACATCCAAAAGGAAGCGACGCTGCA 38446 |||| || ||||| | || ||||| Sbjct 23070 ACATTCAGAAGGAGTCTACTCTGCA 23094 >seq427 Length=47822 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||||||||| ||||||||| | || || ||| | || Sbjct 19171 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 19230 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || || |||| ||||| ||||| || ||| | ||||| Sbjct 19231 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 19290 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || || | ||||||||| |||||||||| Sbjct 19291 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 19350 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || | |||||||| Sbjct 19351 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCTGCG 19385 >seq28 Length=192849 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| |||| || ||| || | |||| | | Sbjct 42387 TTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACCATC 42446 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | || || |||| ||||| ||||| || ||| | ||||| ||||| || Sbjct 42447 GACAACG-TCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGACT 42505 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | ||| ||||| ||||| || || | ||||||||| ||||||||||||||| || Sbjct 42506 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 42565 Query 38432 GG 38433 || Sbjct 42566 GG 42567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500161102208640