Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1209 259 6e-64 seq561 120 4e-22 >seq1209 Length=374226 Score = 259 bits (286), Expect = 6e-64 Identities = 1146/1789 (64%), Gaps = 69/1789 (4%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 |||||| ||||| ||||||| || || | || ||| || || ||| | || || Sbjct 92782 CCACAGCACATGATCATGCGTGTTGCAGTTGGCATCTGGGGCGATGATGTGGAGAGGGTC 92841 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTC 111731 | ||||| ||| || ||||| | |||| ||| || | || || || ||| Sbjct 92842 ATCGAGACCTACAACCTCATGTCAAACAAGTTCTTCACCCATGCCTCGCCCACACTATTC 92901 Query 111732 AACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGAT 111791 || ||||| || || ||||| |||| ||| ||||| | | | |||||||| Sbjct 92902 AATGCTGGCACTCCCCAGCCCCAGCTGTCATCTTGCTTCCTCGTCGACATGAAGGAGGAC 92961 Query 111792 TCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGT 111851 ||| | ||||| || | ||| |||| ||||||| ||||| ||| ||| || Sbjct 92962 AGCATCGAGGGCATCTATGACACACTCAAGACATGTGCCATGATCTCCAAGATGGCCGGA 93021 Query 111852 GGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACAA 111909 || ||||| || || |||| | || | |||| | | |||||| | | || || | Sbjct 93022 GGCATCGGCCTGAACGTCCACCGTATCCGTGCCACC--GGCTCGTACATCGCTGGCACCA 93079 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | ||| || | || || | ||| ||||| || || || ||| ||| || || |||| Sbjct 93080 ACGGTACCTCCAACGGCATCACTCCCATGCTGCGAGTCTTCAACAACACTGCCCGTTATG 93139 Query 111970 TAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 112023 | |||| | ||| ||||| | || | |||| | || || ||||| |||| Sbjct 93140 TCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTCGCTATTTACCTCGAGCCGTGGC 93196 Query 112024 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGT 112083 |||| ||| || | |||||||| || |||| ||||| ||| | |||||| || Sbjct 93197 ACGCTGATGTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGTAAGGAGGAGATCCGAG 93256 Query 112084 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 112143 || || || ||| ||||||||||| || ||||| ||||||||| | || ||| ||| Sbjct 93257 CTCGTGACCTTTTCCTTGCTCTCTGGATCCCTGATCTGTTCATGAAGCGGGTCGAGAAGA 93316 Query 112144 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTG 112203 || | ||| | || | || || || || || || ||| |||| | |||| Sbjct 93317 ACGGTGACTGGACCCTTATGTGCCCCAACGAGTGCCCGGGCCTCGCCGACTGCTACGGTG 93376 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCG-GGC-----GACTGCGA 112257 |||||||||| ||||||||| ||||||||| | || | || ||| ||| || Sbjct 93377 AGGAGTTTGAGGCCCTCTACGAGAAGTACGAGCAGGAGGGCCGCGGCCGTAAGACACTGA 93436 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 || |||| || ||||| | || || || || |||| ||||||||||||| | Sbjct 93437 AGG-CCCAGAAGC-----TGTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGTAACC 93490 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | |||||| |||||||| | |||| ||||| || || ||||| |||| | Sbjct 93491 CCTTTATGCTGTACAAAGATCACGCAAACCGGAAGAGCAACCAGAAGAACCTGGGCACCA 93550 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 || || || |||||||| || || ||| | || | | | | |||||| |||| Sbjct 93551 TCCGCAGCTCTAACCTCTGCACCGAGATCATCGAGTACTCGGCCCCGGATGAGGTCGCTG 93610 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 112497 | || ||||| || || || ||||| || || || ||| || | || | Sbjct 93611 TCTGCAACCTGGCTTCCATTGCTCTGCCGGCATACGTCGATTATGACAACAACTGCTACA 93670 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | | || ||||| || || | |||| ||| | |||| |||| | Sbjct 93671 ACTTCCAGCAGCTGCACGAGGTCACTCAGGTTGTCGTCCGCAACTTGAACAAGATTATCG 93730 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 || || ||||| || || || || || ||| ||||||| || |||| Sbjct 93731 ATGTCAACCACTACCCGGTGAAGGAGGCATACAACAGCAACATGCGACACCGACCTATTG 93790 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGATT 112674 || |||| || || ||||| || |||| |||| | |||| || | | || |||| Sbjct 93791 GTGTCGGCGTTCAGGGTCTTGCCGATGCATTCTTGGCTCTTCGTATGC---CCTTCGATT 93847 Query 112675 CCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT-- 112732 || ||| ||| || | || || || || ||||| || || || || ||||| Sbjct 93848 CCCCCGAGGCGCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCATGCTGCTCTCA 93907 Query 112733 -TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTC 112791 | | || || ||| || |||| || || |||| | || | ||||| | Sbjct 93908 CAGCATCCAG--CGACATTGCCA-AGGTGGAAGGCACATACAAGACATACGAGGGCAGCC 93964 Query 112792 CAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC--AC- 112847 | | || || || | || || || || |||| |||| || |||| |||| || Sbjct 93965 CCGTGTCGCAGGGCATCCTCCAGTTCGACATGT-GGAACGT-----CAAGCCTTCTGACC 94018 Query 112848 --TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT 112905 | ||||||||||| ||||||| |||||||||| ||| |||| ||||| | | Sbjct 94019 TGTGGGACTGGGACGCCCTCAAGGCCAAGATCAAGGAGACTGGTATTCGCAACAGCTTGT 94078 Query 112906 TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTG 112965 |||||||||| ||||| || || |||||| | || ||| |||| || || || ||||| | Sbjct 94079 TGATGGCACCCATGCCTACTGCATCCACCTCGCAGATCCTGGGCAACAACGAGTGCTTCG 94138 Query 112966 AACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCA 113025 | || || || | |||||||| | | || | ||||| || ||||| | | |||| Sbjct 94139 AGCCATATACCTCCAACATCTACCAGCGACGTGTGCTCGCTGGCGAGTTCCAGGTCGTCA 94198 Query 113026 AC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGG 113082 || || |||| | ||||| | |||| |||| | ||||| ||| |||||| Sbjct 94199 ACCCTTGGCTTCTCAGG---GACCTGACAGAGCTTGGCTTGTGGTCTGAGGCCATGAAGA 94255 Query 113083 ATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTA 113142 | | || | | || |||||| | || |||||| || || | ||| || | Sbjct 94256 ACCGTATCATCGCCGAGGACGGTTCCGTGCAGAATATTCCCAGCATCCCGGCTGATATCA 94315 Query 113143 AGAAGTTGTACCGCACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGGCCG 113199 || | ||||| || || ||||||||| ||| || || | | ||||| | Sbjct 94316 AGGCGCTGTACAAGACCGTCTGGGAAATCTCTCAGAGGACAATTG---TGCAGATGGCTG 94372 Query 113200 CAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATG-GAAAGTC 113256 | || ||||| |||||| || | |||| ||| | || | |||| || || | Sbjct 94373 CTGACCGTGGCGCCTTCATCGACC--AGTCTCAGTCACTTAACATCCACATGCGAGAG-C 94429 Query 113257 CAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGG 113316 || | ||| |||| || | |||||| | | |||||| |||||||| || | Sbjct 94430 CATCCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACTG 94489 Query 113317 GGATGTATTACCTCCGATCTAAGGCA-AAGGCGCGCCCAATTCAGTTCA 113364 | ||||| |||||||| | ||||| || ||| ||| || ||||||| Sbjct 94490 GCATGTACTACCTCCGCACCCAGGCAGCAGCCGCACCC-ATCCAGTTCA 94537 >seq561 Length=46336 Score = 120 bits (132), Expect = 4e-22 Identities = 156/215 (73%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 102169 |||||| || || | ||||| || || |||||| |||||||| || || |||| Sbjct 8015 AGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGG----ATCCAGGACCGCG 8070 Query 102170 TT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 ||| ||| |||| || |||| || || || ||||| ||||||||| | Sbjct 8071 AGTCCACCTATGCCCAGCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCG 8130 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 | ||||| | | || | |||||||||||||| || |||||||| |||||| ||| | Sbjct 8131 GCGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTT 8190 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||||||||||||||||| ||||| || ||| Sbjct 8191 CCAACGAGCTTATCTCTCGTGATGAGGGCCTGCAC 8225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620727882387120