Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1209 145 9e-30 seq1840 104 3e-17 seq1718 86.0 7e-12 >seq1209 Length=374226 Score = 145 bits (160), Expect = 9e-30 Identities = 991/1584 (63%), Gaps = 37/1584 (2%) Strand=Plus/Minus Query 109507 GACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGG 109566 ||||||||||| |||||||| ||||| ||||| ||||| | | || | | || Sbjct 94406 GACTGAGACTGGTCGATGAAGGCGCCACGGTCAGCAGCCATCTGCACAATTGTCCTCTGA 94347 Query 109567 CTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTT 109626 ||||||||||| |||||||||| |||||||||| | || ||| || || Sbjct 94346 GAGATTTCCCAGACGGTCTTGTACAGCGCCTTGATATCAGCCGGGATGCTGGGAATATTC 94287 Query 109627 TGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCG 109683 || | || ||| ||| | |||| | | |||||| | | ||||| | || Sbjct 94286 TGCACGGA---ACCGTCCTCGGCGATGATACGGTTCTTCATGGCCTCAGACCACAAGCCA 94230 Query 109684 ACCTTTTTGAGATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTG 109743 | || | | || || | ||| |||||| || || || ||||| || Sbjct 94229 AGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAGCGAGCACA 94170 Query 109744 CGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGT 109803 ||||| |||||||||| | || || || ||||| ||||| |||||||| ||||| || Sbjct 94169 CGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGC 94110 Query 109804 GCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTT 109863 | ||||| || || |||||||| ||||| | | ||||| || | ||| || ||| Sbjct 94109 GAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGCTGTTGCGAATACCAGTCTCCTTG 94050 Query 109864 ACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCAC 109923 | | | | |||||||| || | | || | | || | | |||| Sbjct 94049 ATCTTGGCCTTGAGGGCGTCCCAGTCCCACAGGTCAGAA------GGCTTGACGTTCCAC 93996 Query 109924 ATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCC 109983 || || || || | |||| | | || |||| | | ||| ||| | || Sbjct 93995 ATGTCGAACTGGAGGATGCCCTGCGACACGGGGCTGCCCTCGTATGTCTTGTATGTGCCT 93936 Query 109984 TCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATA 110043 || |||| ||| | ||| || || || || ||||| || || ||||| || || Sbjct 93935 TCCACCTTGGCAATGTCGCTGGATGCTGTGAGAGCAGCATGGTAGATGGTCTCGAAGATT 93876 Query 110044 TGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCA----CAAAGAATAAA 110099 || |||| || | ||| | |||||||| | || | | |||||| Sbjct 93875 TGCTTGTTCAGCTCACGCGCCTCGGGGGAATCGAAGGGCATACGAAGAGCCAAGAATG-- 93818 Query 110100 CACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGC-GTC 110158 |||| || ||||||||||| |||| |||||| || || || |||||| | || Sbjct 93817 --CATCGGCAAGACCCTGAACGCCGACACCAATAGGTCGGTGTCGCATGTTGCTGTTGTA 93760 Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 | ||| || ||||| |||| ||||| | | || | || ||| Sbjct 93759 TGCCTCCTTC-ACCGGGTAGTGGTTGACATCGATAATCTTGTTCAAGTTGCGGACGACAA 93701 Query 110219 TCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATT 110278 || |||| || || || | | | | | | | || | || | || ||| ||| Sbjct 93700 CCTGAGTGACCTCGTGCAGCTGCTGGAAGTTGTAGCAGTTGTTGTCATAATCGACGTATG 93641 Query 110279 TGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCA 110338 || |||||||| || || || ||||| |||| ||| || | | | ||| || | Sbjct 93640 CCGGCAGAGCAATGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGGGCCGAGTACTCGA 93581 Query 110339 AAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT-CGATTTG 110397 || || || || | ||| || || ||| |||| ||||||||| || | || Sbjct 93580 TGATCTCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTCC 93521 Query 110398 GAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGA 110457 | |||| || ||| || || ||||| | ||| ||||||| || ||||| | || || Sbjct 93520 GGTTTGCGTG-ATCTTTGTACAGCATAAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGG 93462 Query 110458 ATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAG--CGAGACCTTCCTCCTCGT 110515 ||||| | ||| || | | | | |||| | | | || | || |||| ||||| Sbjct 93461 ATGGCATACCA--CAGCTTCTGGGCCTTCAGTGTCTTACGGCCGCGGCCCTCCTGCTCGT 93404 Query 110516 ACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGT 110575 |||| ||| | | ||||||| |||| ||||| || | || ||| || || Sbjct 93403 ACTTCTCGTAGAGGGCCTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCCGGGCACTCGT 93344 Query 110576 CGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAA 110635 ||| || | |||| ||| | || || ||| |||| |||||||||||| ||||| | Sbjct 93343 TGGGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAACAGATCAGGGA 93284 Query 110636 TCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTA 110695 |||| | || |||||||||||| || ||| || | ||| ||||| || | Sbjct 93283 TCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCGTGGTTCTTCCGCA 93224 Query 110696 GCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCT 110755 | || | || || | || ||| | |||||| || ||||| || | ||||| || || Sbjct 93223 GGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGG 93164 Query 110756 TACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAG 110812 ||| || |||||| ||||| || || ||| |||||||| | ||||| | Sbjct 93163 GACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGG 93104 Query 110813 GAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGT 110872 || | || || | ||| ||| || || || || || ||||||| || Sbjct 93103 GAGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCGGTGGCACGGATAC 93044 Query 110873 CGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGT 110931 ||||| | || || || || || ||| ||| || ||||| ||| ||||| Sbjct 93043 GGTGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCACATGTCT-TGAGT 92985 Query 110932 GTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATC 110991 || |||| || || || || || |||| || | | || |||||||| |||| | Sbjct 92984 GTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGC 92925 Query 110992 TGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTG- 111050 || || | || || || |||||||| ||||| || | ||||| ||| ||| |||| Sbjct 92924 TGGGGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTGA--AGAACTTGT 92867 Query 111051 -GGACATCTTGTTGTATGTGTCGA 111073 ||||| |||||| || |||| Sbjct 92866 TTGACATGAGGTTGTAGGTCTCGA 92843 >seq1840 Length=236186 Score = 104 bits (114), Expect = 3e-17 Identities = 275/416 (66%), Gaps = 8/416 (2%) Strand=Plus/Plus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 ||| ||| ||||||||||| ||||||| |||||| | || || ||||| ||||| Sbjct 200103 TGTTGAAGCCGTCCATTTCCGTGAGAATCTGGTTAAGTGTTGCCTCGCGCTCCTCGTTCC 200162 Query 11648 AG--GGCATACCACCTGCCGAACGCTTCTTACCGACA----GCGTCAATCTCATCGATGA 11701 | | || | ||||| || | |||||| || || || ||||| |||| Sbjct 200163 CGCCGAAATTGCGGTTGCCGTCCGATCGAGACCGACCAATCGCATCGATTTCATCAATGA 200222 Query 11702 ATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTC 11761 | || || || || | | ||||||||| |||| || || || || | | || | Sbjct 200223 AGACAATGCAAGGGGCGCTCTTACGTGCCTGCGCGAACAGGTCTCGCACTCTCGAGGCAC 200282 Query 11762 CAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTA 11820 | ||||| || ||||| || ||||| | | || || ||||| || || || Sbjct 200283 CGACACCGACAAACATTTCCACGAACTCGGATCCACTGACGCTGAAA-AACGGCACGCCT 200341 Query 11821 GACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGA 11880 || ||||| ||| | || ||||| ||||||||||| || ||||| | ||| | || Sbjct 200342 GATTCACCGGCGGTAGCCTTTGCGAGCAGAGTCTTACCGGTGCCAGGGGGACCGGACAGG 200401 Query 11881 AGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAG 11940 | |||||||||||||||||| || || | | | || || |||||||||||||| Sbjct 200402 ATGGCGCCACGGGGGATCTTAGCGCCTAGCCTCTGGAACCGTTCCGGCTTCTTGAGGAAT 200461 Query 11941 TCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGATACCCTCAACATCGGTGAA 11996 ||||| ||| | || ||||||| ||| || || | | ||||| ||| Sbjct 200462 GACACAAATTCCATGATCTCGACCTTGGCCTCGTCCATGCCGGCGATATCGGCGAA 200517 >seq1718 Length=289554 Score = 86.0 bits (94), Expect = 7e-12 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || ||||| || || ||||| ||| | | || |||| | | | Sbjct 243168 GAAGAGGTCACGGACCCGCTTAGCGCCGACACCGACGTAGACTTCGTCGAACTCGCTGCC 243227 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 ||| | | ||| || || || ||||| |||| ||| || || ||||| || || Sbjct 243228 AGACATGTAGAAGAAAGGGACGCCAGCTTCACCCGCGACGGCCCGTGCCAGGAGGGTTTT 243287 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCA 11913 || |||||||| | |||| | |||||| | || || | |||| |||| | || | Sbjct 243288 TCCGGTACCAGGCGGACCAACCAGAAGGACTCCTTTTGGCAGCTTGCCACCCAAGGTCGA 243347 Query 11914 -AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || | | || || ||||||||||| || |||||||||| || ||||||||||| Sbjct 243348 GAACTTG---TCGGGGTTCTTGAGGAACTCGACAATCTCCTGGAGCTCCTCCTTGGC 243401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588962225323800