Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1489 113 3e-20 seq28 104 2e-17 seq427 102 5e-17 >seq1489 Length=43664 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || || | || |||| || ||||| ||||| ||||| Sbjct 23082 TCCTTCTGAATGTTGTAGTCGGACAGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCAAAG 23023 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||| || ||| Sbjct 23022 ATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTG 22963 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || ||| || |||| ||| ||||| || || ||||| ||||| || Sbjct 22962 TCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 22903 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 22902 AAGATCTGCATA 22891 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 23328 ACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCGTCTTCC 23269 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || || || || || || ||||||||| | || | ||||||||||| | Sbjct 23268 AGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGA 23209 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | |||| || | ||| || |||| || || || || Sbjct 23208 ATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCACCTCGAGCGTGATCGTCTTC 23149 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || ||||| |||||||||||||| Sbjct 23148 CCCGTCAGGGTCTTGACAAAGATCTGCAT 23120 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || | || || || || || ||||| || Sbjct 22855 TTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAA 22796 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || ||||| || | || | ||||||||||| |||||| || ||| Sbjct 22795 GATCAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTT 22736 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | ||| || ||| || |||| ||| ||||| || || ||||| ||||| || Sbjct 22735 GTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 22676 Query 34970 AAAGATCTGCATATTCGTAGACTTGTCGTGAT 35001 ||||||||||| | ||||||| ||||| Sbjct 22675 GAAGATCTGCAT----GGTGACTTGTGGTGAT 22648 >seq28 Length=192849 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || || Sbjct 42565 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 42506 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 ||||| |||||||| | || | ||||||||||| |||||| |||||| | Sbjct 42505 AGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCG 42446 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | ||| || ||| || |||| ||| ||||| || ||||| || |||||||| ||| Sbjct 42445 ATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 42386 >seq427 Length=47822 Score = 102 bits (112), Expect = 5e-17 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || Sbjct 19361 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAG 19302 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | ||||||||||| ||||| ||||| || Sbjct 19301 ATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT 19244 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || | ||| || || | ||| ||||| || |||||||| ||||| Sbjct 19243 --TGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTT 19186 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||||||||| Sbjct 19185 CACGAAGATCTGCAT 19171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324626197440888