Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq709 145 6e-30 >seq709 Length=37314 Score = 145 bits (160), Expect = 6e-30 Identities = 268/383 (70%), Gaps = 14/383 (4%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 |||||||||| || || ||||| | ||| ||||||||| |||| || ||||| Sbjct 18281 TGTGGCACGGCGGCAGCGCCATCTTCTTGAGGTCCGCGGGGTTCCACGCGCTCATGATGA 18222 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124 |||| | ||| | ||||| |||| | || || ||| || |||||| || | Sbjct 18221 TGCGGCGGTCGTACGGGTTCGTCCTCAGCTTGTGGATCACCTCGGC---CAGCTGGTCGA 18165 Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184 | ||| |||| |||||| ||||| ||| |||||| || || || |||| ||||| Sbjct 18164 CGCCCTGGCCCGCGTAGTCGGCCCTGGCGTCTACGTACTCGGCGCCAAAGTGCCGCCACT 18105 Query 30185 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC-TTGTCC 30243 ||||||||||||| || || ||||| || | || | ||| | ||||| | |||| Sbjct 18104 GGAACCCGTACACGGGGCCAAGGTCGCCGGCCTCGCGGTG-GCCCAGCCCGACGCTGTCG 18046 Query 30244 AAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC-TCTTT 30302 | | || | || |||||| ||||||||||||| ||||||| ||| |||||| | Sbjct 18045 AGGTACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACCCCCTGCTCCGAGAGCGACAGC 17986 Query 30303 G--GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAG 30360 | ||| ||| | ||| | | |||||||||||||||| | | ||| |||||| ||| Sbjct 17985 GACGAG-GTGTCG-CCCGAT-ATGAACCACAGCAGCTCCGCGAGGACCGCCTTCTGGAAG 17929 Query 30361 ACCCTCTTGGTCGTGAGGAGGGG 30383 || | ||| || || ||||| || Sbjct 17928 ACGCGCTTCGTGGTCAGGAGTGG 17906 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29779 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 29838 ||||||||||| ||||| | |||| || ||||| ||| ||||||||| ||||| Sbjct 18606 GGCTCCCTCTCCAGCTGCACCCGGAGCGCGTCGACGTGGTCCGCGTAGACGTGCGCGTCG 18547 Query 29839 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29897 |||| | ||| | | ||| ||||| | || || ||||| || ||||||| ||| Sbjct 18546 CCCATGACGTGCGTGAGGCTC-CCCGGGACGAGGTCGCACACGTGCGCGATCATGTGCGT 18488 Query 29898 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 29957 || || ||||||||||||||||| || || || || || |||||||| | || | ||| Sbjct 18487 CAGCAGCGAGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCGCTG 18428 Query 29958 GTAGAGCTGACA 29969 ||| ||||| || Sbjct 18427 GTACAGCTGGCA 18416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408608282369483