Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1209 403 3e-107 seq561 176 8e-39 >seq1209 Length=374226 Score = 403 bits (446), Expect = 3e-107 Identities = 1059/1599 (66%), Gaps = 39/1599 (2%) Strand=Plus/Minus Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755 ||| || |||||| |||||| ||||| | | | | |||||| ||||| | | || Sbjct 94413 GTTAAGTGACTGAGACTGGTCGATGAAGGCGCCACGGTCAGCAGCCATCTGCACAATTGT 94354 Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815 ||||| |||| ||||| ||||||||| | | | |||| || | |||| || ||| Sbjct 94353 CCTCTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGATATCAGCCGGGATGCTGGG 94294 Query 212816 GATGTTCTGCACAGACCC--CCTGTGT-ATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 || |||||||| || || ||| | ||| | | | | |||| |||| ||| Sbjct 94293 AATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTCTT---CATGGCCTCAGACCA 94237 Query 212873 GAGGCCCCTGGTCTC-CAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTG 212931 | ||| | ||| |||| | ||| || ||||||||| | |||||| || || | Sbjct 94236 CAAGCCAA-GCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAG 94178 Query 212932 AGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCA 212991 |||||| | | |||||| | ||| || || || ||||||| || ||||||||| |||| Sbjct 94177 CGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGTTGCCCA 94118 Query 212992 GAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGT 213051 | ||||| | ||| || || |||||||| |||| || | ||||| | | || Sbjct 94117 GGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGCTGTTGCGAATACCAG 94058 Query 213052 GCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCT 213111 ||| ||| | | || | |||||||||| | |||| ||| || Sbjct 94057 TCTCCTTGATCTTGGCCTTGAGGGCGTCCCAGTCCCACAGGTCAGA-AGG--------CT 94007 Query 213112 TCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGG 213171 | |||||||||||||| ||||| | |||||| | |||||||||||||| ||| | Sbjct 94006 TGACGTTCCACATGTCGAACTGGAGGATGCCCTGCGACACGGGGCTGCCCTCGTATGTCT 93947 Query 213172 AGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGG 213231 ||| | ||| | | ||||||| | |||| ||| || || ||||| | |||||||| Sbjct 93946 TGTATGTGCCTTCCACCTTGGCAATGTCGCTGGATGCTGTGAGAGCAGCATGGTAGATGG 93887 Query 213232 TTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGC 213291 | || || || | | |||| |||| ||||| ||||| ||||||||| | | | Sbjct 93886 TCTCGAAGATTTGCTTGTTCAGCTCACGCGCCTCGGGGGAATCGAAGGGCAT-ACGAAGA 93828 Query 213292 GTTG-GAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTA 213350 | ||| |||| || || ||||| || |||| || || |||| ||||| || ||| Sbjct 93827 GCCAAGAATGCATCGGCAAGACCCTGAACGCCGACACCAATAGGTCGGTGTCGCATGTTG 93768 Query 213351 GACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGG 213410 ||| | ||||| || ||||| |||| ||||| |||||||| | ||||||| Sbjct 93767 CTGTTGTATGCCTCCTTCACCGGGTAGTGGTTGACATCGATAATCTTGTTCAAGTTGCGG 93708 Query 213411 GTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC 213470 | | || | ||||| | | ||| | || | ||| | || | | | | Sbjct 93707 ACGACAACCTGAGTGACCTCGTGCAGCTGCTGGAAGTTGTAGCAGTTGTTGTCATAATCG 93648 Query 213471 ACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTG 213530 || | | ||||| || ||| ||||||||||| || || ||||| | | | | | | Sbjct 93647 ACGTATGCCGGCAGAGCAATGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGGGCCGAG 93588 Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||| |||||||||||||| ||||| || ||||||||||||||||||| ||||| Sbjct 93587 TACTCGATGATCTCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTG 93528 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 ||| ||| || ||| ||||| ||||| ||||| || ||||| ||| | | Sbjct 93527 CTCTTCCGGTTTGCGTGATCTTTGTACAGCATAAAGGGGTTACCAGTCTCGGTCTGAGCC 93468 Query 213651 ACCAGTATCTGGCT--CCAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCG 213708 | || || ||| ||| || | | |||||| | | || || || ||| | Sbjct 93467 TCAAGGAT--GGCATACCACAGCTTCTGGGCCTTCAGT----GTCTTACGGCCGCGGCCC 93414 Query 213709 TAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCC 213767 | |||||||| |||||||| | | || || | || || | | || ||| Sbjct 93413 TCCTGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCC 93354 Query 213768 GGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAA 213826 || || ||| ||||| ||| ||||||| |||| | |||| ||| | || |||||| Sbjct 93353 GGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTC-GACCCGCTTCATGAA 93295 Query 213827 CAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGA 213886 ||| || |||| ||| || || ||| ||||| | | | |||| ||| || Sbjct 93294 CAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCGTG 93235 Query 213887 GTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGC 213946 ||| || ||||| || || || || |||| || |||||||||||||| | ||| || || Sbjct 93234 GTTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGC 93175 Query 213947 AAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGAT 214003 ||||| || | || | ||||| |||||||| || | ||| ||||||||| Sbjct 93174 GAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAGAC 93115 Query 214004 GCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGA 214063 ||||| | ||| | |||||||| |||||||| || || || |||||||||| Sbjct 93114 TCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCGGT 93055 Query 214064 GGCCC---TCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGC 214120 ||| | | ||| | | | || || ||||| ||||| ||||||||||||||| Sbjct 93054 GGCACGGATACGGTGG---ACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGC 92998 Query 214121 GCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAA 214180 || | | | || || |||||| | |||||||| || | | || | | ||| Sbjct 92997 ACATGTCTTGAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAA 92938 Query 214181 GCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGAT 214240 ||| || ||||||||| || | ||||| ||||| || ||||| ||||||| | Sbjct 92937 GCAAGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGT 92878 Query 214241 CATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGAC 214279 | |||||||| || | ||| |||||||||| | ||| Sbjct 92877 GAAGAACTTGTTTGACATGAGGTTGTAGGTCTCGATGAC 92839 >seq561 Length=46336 Score = 176 bits (194), Expect = 8e-39 Identities = 303/437 (69%), Gaps = 5/437 (1%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || | | ||||||||||| Sbjct 8528 CTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTC 8469 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| | | || |||||| | || ||||| |||| | Sbjct 8468 CATGAAGTCGAAGGGGTTCGACGACTTGTACACCT-TCTCGTTGCCCAGAGCGACCAGGA 8410 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 || | || |||||| |||| ||||| | ||||||| || ||||||||| | |||| Sbjct 8409 GGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGG 8350 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 || | |||| || || || |||||||| ||| ||||| || | || | Sbjct 8349 CGCATGGAAGGGCCTCGGTCAGGAATTCCTTCTCGATCATGACGGCCTCAGTGATGATGT 8290 Query 48078 GCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAA 48137 || ||||| || || ||| | |||||| | | |||| |||||| | Sbjct 8289 CCTGGACGCGCTGCTTGCTTGGGCGGTTCCTGAGGTGCGAGA---ACAGCAGGCAGGCGA 8233 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 |||| |||||| ||| || || || ||| ||| ||||||| ||| ||||||||||| Sbjct 8232 AGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAAAAGGTGAGACCAGGCA 8173 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || ||||||||||| || | ||||| | ||| |||||||||||||| Sbjct 8172 TGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATGCCCT 8113 Query 48258 CCACTGCCGCGAACGCG 48274 | || || ||||| ||| Sbjct 8112 CGACGGCAGCGAAGGCG 8096 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 ||| |||| ||||| | ||||| || ||||||||| ||||||||| | ||||||| Sbjct 7886 TACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAACGGGCCTCA 7827 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | || || || | ||| | ||||| ||| ||||| ||||| || ||||||||| Sbjct 7826 GGGATTTGGACCTCGCCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATGCCATCTGAA 7767 Query 48545 GCAGCAAAGAAGGCAAGGA 48563 || || |||||||| |||| Sbjct 7766 GCGGCGAAGAAGGCGAGGA 7748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931511013776640