Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1209 250 5e-61 seq561 167 4e-36 >seq1209 Length=374226 Score = 250 bits (276), Expect = 5e-61 Identities = 901/1405 (64%), Gaps = 56/1405 (4%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | |||||| | | |||||| | ||| || || | || Sbjct 94200 GTTGACGACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGG 94141 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||||||||| | ||| || || ||||||||||||| Sbjct 94140 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCAT 94081 Query 221236 CAGCAGACTGTTGCGCAGTCCGAATCTA-TTGAT---GGACTTTCTCAGCGTGTTCCAGT 221291 || || |||||||| | || | ||| ||||| || ||| || | || ||||| Sbjct 94080 CAACAAGCTGTTGCGAATACC-AGTCTCCTTGATCTTGGCCTTG---AGGGCGTCCCAGT 94025 Query 221292 CACAGTGTCCTCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT 221351 | || |||||| | Sbjct 94024 CCCA---------CAGGTCAGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATGCCCT 93974 Query 221352 TAGACACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAG 221411 ||||| || || || ||||| | || ||| | || | || | ||| | ||| | Sbjct 93973 GCGACACGGGGCTGCCCTCGTATGTCTTGTATGTGCCTTCCACCTTGGCAATGTCGCTGG 93914 Query 221412 ACTGC-GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GC 221469 | ||| || || ||||| |||||||||||||| ||||| |||||| || ||| | || Sbjct 93913 A-TGCTGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAG-CTCACGCGC 93856 Query 221470 CTCGGGAGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCC 221529 |||||| ||| |||||||||||| || | || | ||||| || ||||| || || Sbjct 93855 CTCGGGGGAATCGAAGGGCATACGAAGAGCCAAGAATGCATCGGCAAGACCCTGAACGCC 93796 Query 221530 GATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTT 221589 || ||| || || | ||||| | ||||| | || || ||| || || ||| Sbjct 93795 GACACCAATAGGTCGGTGTCGCATGTTGCTGTTGTATGCCTCCTTCACCGGGTAGTGGTT 93736 Query 221590 GACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTG 221649 ||| ||||| | ||||| | ||| | || || | | |||||| ||||| ||| Sbjct 93735 GACATCGATAATCTTGTTCAAGTTGCGGACGACAACCTGAGTGACCTCGTGCAGCTGCTG 93676 Query 221650 GTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAAC 221709 | ||| | || || || | || || | || || |||| Sbjct 93675 GAAGTTGTA------------GCAGTTGTTGTCATAATCGACGTATGCCGGCAGAGCAAT 93628 Query 221710 GCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACA 221769 | |||||||| || || || ||||| ||| | | |||| |||||||| || || Sbjct 93627 GGAAGCCAGGTTGCAGACAGCGACCTCATCCGGGGCCGAGTACTCGATGATCTCGGTGCA 93568 Query 221770 GAGGTT---GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGC 221826 |||||| ||||| |||||| ||||||| || || || ||| || || || Sbjct 93567 GAGGTTAGAGCTGCG---GATGGTGCCCAGGTTCTTCTGGTTGCTCTTCCGGTTTGCGTG 93511 Query 221827 GTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCA 221886 || ||||| ||||||||||| |||||||| ||||||| | || || | ||| Sbjct 93510 ATCTTTGTACAGCATAAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCA 93451 Query 221887 GAGTTCTCTGGCGCT-CACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGT 221943 || | ||||| || || ||| | | | ||||| || || ||| | || Sbjct 93450 CAGCT-TCTGGGCCTTCAGTGTCTTACGGCCGCGGCCCTC---CTGCTCGTACTTCTCGT 93395 Query 221944 ATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACA 222003 | || || | |||||| |||||||| ||| | ||||| || ||| | ||| || Sbjct 93394 AGAGGGCCT--CAAACTCCTCACCGTAGCAGTCGGCGAGGCCCGGGCACTCGTTGGGGCA 93337 Query 222004 CATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAG 222063 ||| || |||||| ||| | | ||||| || |||||| || || |||||||| || Sbjct 93336 CATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAACAGATCAGGGATCCAGAG 93277 Query 222064 CGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAA 222123 || | || || || | | || ||||||| |||| ||| |||| ||| || | Sbjct 93276 AGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCGTGGTTCTTCCGCAGGTCGAG 93217 Query 222124 AAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTT 222183 ||||| || | ||||||||||||||||| || || | || | || ||||| ||||| Sbjct 93216 GAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGGACGCTT 93157 Query 222184 GTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCA 222242 |||||||||||| || | ||| ||| | |||||||| || || | || | Sbjct 93156 GTTGCCACCCTGGTCGA-CATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGAGTGA 93098 Query 222243 GTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--T 222300 |||||||| |||||||||||| ||||||| ||| ||| | || ||| | Sbjct 93097 TGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCGGTGGCAC---GGATACGGT 93041 Query 222301 GG-CAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGT 222359 || | || |||||| || ||||| || ||||||||||| || ||||||| |||| Sbjct 93040 GGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCACATGTCTTGAGTGTGT 92981 Query 222360 CCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAG 222419 | ||||||||| || ||||||||| | || | || || ||||| |||| ||| | Sbjct 92980 CATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGGG 92921 Query 222420 ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACA 222479 | || | | || || || || ||||| ||| || || ||| | | |||| Sbjct 92920 GCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGACA 92861 Query 222480 TCAGATCGTACGTCTCTACGACTCT 222504 | || | ||| ||||| | ||| || Sbjct 92860 TGAGGTTGTAGGTCTCGATGACCCT 92836 >seq561 Length=46336 Score = 167 bits (184), Expect = 4e-36 Identities = 345/517 (67%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868 ||| ||||| | |||||| ||||| ||||||||||| | || ||| | || Sbjct 8019 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGAGTCC-AC 8077 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 | || | |||| ||||| ||||| ||||| || ||||||||||| |||||||| | || Sbjct 8078 CTATGCCCAGCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCCTT 8137 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 || ||||||||||||||||| || || |||||| || || |||||||||||| Sbjct 8138 CGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTTCCAACGA 8197 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||| ||| | || ||||| || |||| || || ||||||||||| | | || || Sbjct 8198 GCTTATCTCTCGTGATGAGGGCCTGCACACCGACTTCGCCTGCCTGCTGTTCTCG---CA 8254 Query 26049 CTTGCTCCACAAACCTTC---TCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGG 26104 | | || |||| | |||| || |||| | ||||||| ||||| || Sbjct 8255 CCT----CAGGAACCGCCCAAGCAAGCAGCGCGTCCAGGACATCATCACTGAGGCCGTCA 8310 Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164 |||||||||||| || | | ||||||||| || Sbjct 8311 TGATCGAGAAGGAATTCCTGACCGAGGCCCTTCCATGCGCCCTGCTCGGCATGAACTCCA 8370 Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG 26224 ||||||| || |||||||||| || ||||||| || ||| | ||||| || Sbjct 8371 ACCTCATGAAGCAGTACATTGAGTTCGTCGCCGACCGCCTCCTGGTCGCTCTGGGCAACG 8430 Query 26225 CCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | | |||| || | ||||| |||||||| ||||| ||||| || | | || | Sbjct 8431 AGAAGGTGTACAAGTCGTCGAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCA 8490 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||||||| || ||| | ||||| ||||| || Sbjct 8491 AGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCA 8527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928823076642240