Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20]
1,871 sequences; 55,029,878 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 102 2e-16
seq107 102 2e-16
seq561 98.7 3e-15
>seq1209
Length=374226
Score = 102 bits (112), Expect = 2e-16
Identities = 335/515 (65%), Gaps = 12/515 (2%)
Strand=Plus/Minus
Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699
||||| ||| |||||||| || ||||||||| | ||||||||||| || | |
Sbjct 93578 ATCTCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTCCGG 93519
Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759
|| ||| ||||| || || | ||| | || ||||| |||| || || || ||
Sbjct 93518 TTTGCGTGATCTTTGTACAGCATAAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGGATG 93459
Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819
||| || | |||| || | | ||| | | ||| ||| ||| || |||
Sbjct 93458 GCATACCACAGCTTCTGGGCCTTCAGTGTCTTACGGCCGCGGCCCTCCTGCTCGTACTTC 93399
Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879
|| || | | ||||||||||| || || || || ||||||| | ||||
Sbjct 93398 TCGTAGAGGGCCTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCCGGGCACTCGTTGGGG 93339
Query 155880 CAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936
|| | || | ||| | || || ||| | |||| ||| || | |||| |
Sbjct 93338 CACATAAGGGTCCAGTCACCGTTCTTCTCGA---CCCGCTTCATGAACAGATCAGGGATC 93282
Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAG 155995
|| | |||| ||||||||| | || | || |||||| | ||||| |||||||| ||
Sbjct 93281 CAGAGAGCAAGGAAAAGGTCACGAGC-TCGGATCTCCTCCTTACCGTGGTTCTTCCGCAG 93223
Query 155996 CTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC--- 156052
|| | ||| || | ||||| || ||||| || || ||||| || |||
Sbjct 93222 GTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGG 93163
Query 156053 ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG 156112
| | | ||||||||||| || ||||| || ||||| || |||||||| | ||||| ||
Sbjct 93162 ACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGG 93103
Query 156113 AATAATACCATTGGAAGTGCCATTGGTTCC-GCGA 156146
| | || || ||||| || || ||||| || ||||
Sbjct 93102 AGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGA 93068
>seq107
Length=124689
Score = 102 bits (112), Expect = 2e-16
Identities = 390/599 (65%), Gaps = 24/599 (4%)
Strand=Plus/Minus
Query 251402 AGGCG--ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATA 251459
||||| || || ||||| | | ||| | ||||| ||| ||||||| ||| | ||| |
Sbjct 85448 AGGCGTCATGAGTCCACAAATCTCACAGATGTGGACCCTGAAAGCATCTGATACCTCAAA 85389
Query 251460 TAGCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTC 251519
| || |||| |||| | ||||| || | ||||| |||||||| ||||||||
Sbjct 85388 CAAGCGCTCCTTCAGGAAGGCGGCAGCACCATGGGCGATCATGCAATCACGTTCCATTTC 85329
Query 251520 ACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAA 251578
|||||||| || |||||||| || || | ||| || | ||||| || || | ||||
Sbjct 85328 TCCGAAACGCAGGCCACCATCTCGGGCACGACCTTCCACGGGCTGTCGGGTCATGATTTG 85269
Query 251579 CCATAGGAC-CGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGG 251637
| | || | ||| | ||| || ||| || | ||||| || |||||||||
Sbjct 85268 CACTGGGCCACGA--GCACGGGCGTGGATCTTGTCGTCCACCATGTGGCGAAGACGCTGG 85211
Query 251638 TAGAATGCGGGACCGATGAAGA--TGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTA 251694
||| ||| || |||| ||||| || | | || |||| | ||||| | |||
Sbjct 85210 TAGTATGTCGGCCCGAAGAAGACCTGAGCTTTGAGC--TTGCGC-CCAGTGTGCCCGTGG 85154
Query 251695 TACATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCT---GTAGCTCTGAAGCAATA 251751
||||| || ||| ||| |||| ||| ||| || || | || || || |
Sbjct 85153 TACATGACCTCGAAACCACGCGATTGATATCCATGTGCCTGGAGAAGATCAGAGACCGAG 85094
Query 251752 TCACCAATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAAC 251811
| ||| | ||| | | | ||| || | || || | | ||| | | | ||
Sbjct 85093 T---CAACCGTGACATCGGTGAAAGGCGTTGCATCACCCTCCATCCCCTTCAGCGTTGAC 85037
Query 251812 ACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGG 251871
||||| | || ||| ||| || || || |||||||| || || || |||
Sbjct 85036 ACTTTTGACAGGAGACACTCAATCAAATGAGCAATTGTCATACGTGACGGGATGGCGTGG 84977
Query 251872 GGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT-- 251929
|| |||||||||||||| || ||| || || | |||| ||||| ||| ||||
Sbjct 84976 GGGTTGATGATGATGTCAGGCGTCACCCCTTCGCGACTGAAAGGCATGTCC---TCCTGA 84920
Query 251930 CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
| || || |||||||| ||||| || |||||||||||| ||||| ||||||||
Sbjct 84919 CGGTAGGTGACACCAATAGTGCCCTTCTGACCGTGACGAGAAGCAAACTTGTCACCAAT 84861
>seq561
Length=46336
Score = 98.7 bits (108), Expect = 3e-15
Identities = 148/208 (71%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG-CGAGTTTTGCTACTCG 133509
||||| | ||||||||| | || |||||||||||| ||| | | | | ||| ||
Sbjct 8031 AAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGAC-CGCGAGTCCACCTATGCCCAGCG 8089
Query 133510 TCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTT 133569
|| || || || |||| || |||||||| || ||||| || || ||| ||| || ||
Sbjct 8090 CCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCCTTCGCCTCCATCTT 8149
Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629
||||| || |||||||| | | ||||| || ||||| ||||| ||||| || |
Sbjct 8150 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTTCCAACGAGCTTATCTCTCG 8209
Query 133630 GGACGAGGCACTTCACACCGAATTTGCC 133657
|| |||| || |||||||| || |||
Sbjct 8210 TGATGAGGGCCTGCACACCGACTTCGCC 8237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471782317312527
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |