Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1209 102 2e-16 seq107 102 2e-16 seq561 98.7 3e-15 >seq1209 Length=374226 Score = 102 bits (112), Expect = 2e-16 Identities = 335/515 (65%), Gaps = 12/515 (2%) Strand=Plus/Minus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 ||||| ||| |||||||| || ||||||||| | ||||||||||| || | | Sbjct 93578 ATCTCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTCCGG 93519 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || ||| ||||| || || | ||| | || ||||| |||| || || || || Sbjct 93518 TTTGCGTGATCTTTGTACAGCATAAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGGATG 93459 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | |||| || | | ||| | | ||| ||| ||| || ||| Sbjct 93458 GCATACCACAGCTTCTGGGCCTTCAGTGTCTTACGGCCGCGGCCCTCCTGCTCGTACTTC 93399 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 || || | | ||||||||||| || || || || ||||||| | |||| Sbjct 93398 TCGTAGAGGGCCTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCCGGGCACTCGTTGGGG 93339 Query 155880 CAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || | || | ||| | || || ||| | |||| ||| || | |||| | Sbjct 93338 CACATAAGGGTCCAGTCACCGTTCTTCTCGA---CCCGCTTCATGAACAGATCAGGGATC 93282 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCTTCCGTAG 155995 || | |||| ||||||||| | || | || |||||| | ||||| |||||||| || Sbjct 93281 CAGAGAGCAAGGAAAAGGTCACGAGC-TCGGATCTCCTCCTTACCGTGGTTCTTCCGCAG 93223 Query 155996 CTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACC--- 156052 || | ||| || | ||||| || ||||| || || ||||| || ||| Sbjct 93222 GTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGG 93163 Query 156053 ATTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG 156112 | | | ||||||||||| || ||||| || ||||| || |||||||| | ||||| || Sbjct 93162 ACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGG 93103 Query 156113 AATAATACCATTGGAAGTGCCATTGGTTCC-GCGA 156146 | | || || ||||| || || ||||| || |||| Sbjct 93102 AGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGA 93068 >seq107 Length=124689 Score = 102 bits (112), Expect = 2e-16 Identities = 390/599 (65%), Gaps = 24/599 (4%) Strand=Plus/Minus Query 251402 AGGCG--ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATA 251459 ||||| || || ||||| | | ||| | ||||| ||| ||||||| ||| | ||| | Sbjct 85448 AGGCGTCATGAGTCCACAAATCTCACAGATGTGGACCCTGAAAGCATCTGATACCTCAAA 85389 Query 251460 TAGCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTC 251519 | || |||| |||| | ||||| || | ||||| |||||||| |||||||| Sbjct 85388 CAAGCGCTCCTTCAGGAAGGCGGCAGCACCATGGGCGATCATGCAATCACGTTCCATTTC 85329 Query 251520 ACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGA-GATTAA 251578 |||||||| || |||||||| || || | ||| || | ||||| || || | |||| Sbjct 85328 TCCGAAACGCAGGCCACCATCTCGGGCACGACCTTCCACGGGCTGTCGGGTCATGATTTG 85269 Query 251579 CCATAGGAC-CGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGG 251637 | | || | ||| | ||| || ||| || | ||||| || ||||||||| Sbjct 85268 CACTGGGCCACGA--GCACGGGCGTGGATCTTGTCGTCCACCATGTGGCGAAGACGCTGG 85211 Query 251638 TAGAATGCGGGACCGATGAAGA--TGCTCGAAG-GCATTTGCTCTCCAGTTAGAGCGTTA 251694 ||| ||| || |||| ||||| || | | || |||| | ||||| | ||| Sbjct 85210 TAGTATGTCGGCCCGAAGAAGACCTGAGCTTTGAGC--TTGCGC-CCAGTGTGCCCGTGG 85154 Query 251695 TACATAACTTCGTTTCCATTAGATTCATAACCAAGTTTCT---GTAGCTCTGAAGCAATA 251751 ||||| || ||| ||| |||| ||| ||| || || | || || || | Sbjct 85153 TACATGACCTCGAAACCACGCGATTGATATCCATGTGCCTGGAGAAGATCAGAGACCGAG 85094 Query 251752 TCACCAATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAATCAAC 251811 | ||| | ||| | | | ||| || | || || | | ||| | | | || Sbjct 85093 T---CAACCGTGACATCGGTGAAAGGCGTTGCATCACCCTCCATCCCCTTCAGCGTTGAC 85037 Query 251812 ACTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGG 251871 ||||| | || ||| ||| || || || |||||||| || || || ||| Sbjct 85036 ACTTTTGACAGGAGACACTCAATCAAATGAGCAATTGTCATACGTGACGGGATGGCGTGG 84977 Query 251872 GGATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT-- 251929 || |||||||||||||| || ||| || || | |||| ||||| ||| |||| Sbjct 84976 GGGTTGATGATGATGTCAGGCGTCACCCCTTCGCGACTGAAAGGCATGTCC---TCCTGA 84920 Query 251930 CAATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || || |||||||| ||||| || |||||||||||| ||||| |||||||| Sbjct 84919 CGGTAGGTGACACCAATAGTGCCCTTCTGACCGTGACGAGAAGCAAACTTGTCACCAAT 84861 >seq561 Length=46336 Score = 98.7 bits (108), Expect = 3e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133451 AAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG-CGAGTTTTGCTACTCG 133509 ||||| | ||||||||| | || |||||||||||| ||| | | | | ||| || Sbjct 8031 AAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGAC-CGCGAGTCCACCTATGCCCAGCG 8089 Query 133510 TCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTT 133569 || || || || |||| || |||||||| || ||||| || || ||| ||| || || Sbjct 8090 CCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCCTTCGCCTCCATCTT 8149 Query 133570 TTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAG 133629 ||||| || |||||||| | | ||||| || ||||| ||||| ||||| || | Sbjct 8150 CTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTTCCAACGAGCTTATCTCTCG 8209 Query 133630 GGACGAGGCACTTCACACCGAATTTGCC 133657 || |||| || |||||||| || ||| Sbjct 8210 TGATGAGGGCCTGCACACCGACTTCGCC 8237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471782317312527