Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq535 244 1e-58 seq1266 199 5e-45 seq1209 185 1e-40 seq1113 147 3e-29 seq561 145 9e-29 seq285 120 4e-21 seq1354 114 2e-19 seq1743 102 1e-15 seq1051 93.3 5e-13 >seq535 Length=232719 Score = 244 bits (270), Expect = 1e-58 Identities = 292/397 (74%), Gaps = 6/397 (2%) Strand=Plus/Minus Query 18092 CCACCTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGT 18151 ||| || ||||||||| || | | ||||||||||||| |||||||| |||||| Sbjct 18837 CCAGCTATGGCGAGTCCCATTGTCGGTCCGTCGGCTGCATCGTCGACGGCTGCCCGCCGG 18778 Query 18152 GCATGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGG 18211 ||||| | ||| |||| |||||||||||||| ||| || || ||||| ||||||||| Sbjct 18777 GCATGGCCCTGACCGAAGCCGACATCCAGCCGCAGATGACACGCCGCCGCCCGGGCCAGT 18718 Query 18212 GCGCACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGA 18271 ||| | |||| |||||||||||| || |||||| |||||||| ||||| ||| Sbjct 18717 CCGCCATCACCACCCCGCGCAACGAGAAGGACCGCGTCGAGATCCAGTCCGGCACCGAGT 18658 Query 18272 ACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCG 18331 ||||| |||| ||||| | || ||||||| ||| |||| || ||||| ||| Sbjct 18657 ACGGCGTCACACTCGGAACCCCGATCGGCCTGCGCGTGCTCAACGAGGATCAGCGCCCCA 18598 Query 18332 TCGACTATTCCGA------CATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCT 18385 ||||| ||| ||| |||| ||||| ||||| |||||||||| || | Sbjct 18597 AGGACTACGGCGACGCCACCATCGACAAGTACCCGCGCCCCTCGCACGCCGACTGGACAT 18538 Query 18386 ACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGA 18445 || | | ||||||||| ||||||| ||||| ||||| |||||| |||||||||| Sbjct 18537 ACCTCGAGAAGTACGGCGTCAAGGCCTCGTCCGGCGGCGGCCGGAGCAGCGCCCGCGAGA 18478 Query 18446 CCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 || || ||||||||||||||||| |||| ||||| Sbjct 18477 CCATCGGCCGCGTCGCCGCCGGCGCCATCGCAGAGAA 18441 Score = 145 bits (160), Expect = 9e-29 Identities = 115/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||||||||||||| || || ||||| | |||||||| | ||||| |||||| Sbjct 18205 GACAGCATCGGCGGCACCGTCACCTGCGTCATCAGGAACGTGCCCTCCGGCCTGGGCGAG 18146 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||||| |||||| ||| ||||||||||||||||| ||||| |||||| Sbjct 18145 CCCTGCTTCGACAAGATGGAGGCCCTGCTGGCCCACGCCATGCTGTCCATCCCTGCCACC 18086 Query 19167 AAGGGATTCGAGATTGGC 19184 ||||| |||||||| ||| Sbjct 18085 AAGGGCTTCGAGATCGGC 18068 >seq1266 Length=56925 Score = 199 bits (220), Expect = 5e-45 Identities = 292/406 (72%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 1573901 GCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGC 1573960 ||| |||| || ||||| || ||| | || |||||||| || | || | || Sbjct 49498 GCCGGGCATAGGAAAGACGACAAGCGTGCTCTGCCTGGCGCGGCAGCTGCTCGGAGACGC 49439 Query 1573961 CGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCG 1574020 | | | ||||| ||||| || |||||||| ||||||||||||||| ||||||||||||| Sbjct 49438 CTACAAGGAGGCAGTGCTGGAGCTCAACGCCTCGGACGAGCGCGGCATCGACGTCGTGCG 49379 Query 1574021 CAAGATCATCAAGCACCACGCCTCCAAGAGGATCGAC-CTGCCGCCCGGACGCCACAAGG 1574079 ||| |||||| | ||| |||| | | ||| ||||| | || || |||||| Sbjct 49378 CAACCGGATCAAGGGCTTCGCGCAGAAGAAGGT-GACGCTGCCCGCGGGCCGGCACAAGC 49320 Query 1574080 TGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCA 1574139 | ||||||| |||||||||||| || | ||||||| || |||||||| ||| || | Sbjct 49319 TCGTCATCCTGGACGAGGCCGACAGCATGACGTCGGGCGCGCAGCAGGCGCTGAGGCGGA 49260 Query 1574140 CCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGG 1574199 | ||||| | || |||||||||||||||| ||| | ||||||||| ||| | | Sbjct 49259 CGATGGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCGTGCAACCAGTCCAACAAGA 49200 Query 1574200 TCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGC 1574257 |||||||| | || | |||||| |||||||| ||||| | | ||||||| |||| Sbjct 49199 TCATCGAGCCGCTGC--AGTCGCGGTGCGCCATCCTGCGGTACGCGCGCCTGACGGACGG 49142 Query 1574258 CCAGATACGCGCGCGCCT-ATGCGATATTGTCGCCGCCGAAAAGGT 1574302 |||| | | |||||| |||| | || ||| ||||| ||||| Sbjct 49141 CCAGGTCGTCAAGCGCCTGATGC-AGATCATCGAGGCCGAGAAGGT 49097 >seq1209 Length=374226 Score = 185 bits (204), Expect = 1e-40 Identities = 337/489 (69%), Gaps = 17/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| || || || |||| ||| ||||| || |||||||| || ||||||||| Sbjct 93147 CTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGAGTGATGCCGTTGGA 93088 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| || | ||| | ||||| ||| || | ||| || | ||| Sbjct 93087 GGTACCGTTGGTGCCAGCGATGTACGAGCCGGTGGCACGGATACGGTGGACGTTCAGGCC 93028 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 |||||| |||||| ||||||||| | || || ||| ||||| ||||| |||||||||| Sbjct 93027 GATGCCTCCGGCCATCTTGGAGATCATGGCACA-TGTCTTGAGTGTGTCATAGATGCCCT 92969 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 |||| ||| |||||||||| ||||| ||||| || || || || || | |||| Sbjct 92968 CGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGGGGCTGGGGAGTGC 92909 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | || ||||| || ||||||| || |||||| |||| |||||| || ||||| Sbjct 92908 CAGCATTGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGACATGAGGTTGTAGG 92849 Query 1630364 TGGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGA 1630423 | ||| || | | ||| |||| || || ||| || ||| | || | Sbjct 92848 TCTCGATGACCCTCTCCA---CATCATC-------GC---CCC--AGATGCCAACTGCAA 92804 Query 1630424 CGCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGG 1630483 | ||||||| ||||| ||| ||||||||||| || |||| | ||| ||||||| Sbjct 92803 CACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTGCCGTCGAGCTTCAGGAGGTAGG 92744 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGG 1630543 | || | |||| ||| || ||||| || | || ||||| || | | |||| Sbjct 92743 AGCGCTCGAGGGTCTTGAACCCGAAGTATTGGTAGCCGAAGTCGCGATCATAGACAATGG 92684 Query 1630544 CGGCGTCGA 1630552 | | ||||| Sbjct 92683 CCGAGTCGA 92675 >seq1113 Length=268234 Score = 147 bits (162), Expect = 3e-29 Identities = 133/165 (81%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| || ||| ||| | ||||| ||| | ||||| ||| | ||||| |||| Sbjct 154291 GTGGGACCAGAAGTACATGC-AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTTGCCG 154233 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||| | ||||||||| | ||||| ||| | || |||||| | || || ||||||| Sbjct 154232 CCAACTACATGGACATCAAGGCCCTGCTTGATGTCGGCTGCAAGACAGTCGCAAACATGA 154173 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||| || |||||||||||||||||||| ||||||| Sbjct 154172 TCAAGGGCAAGTCTCCTGAGGAGATCCGCAAGACCTTCAACATCA 154128 >seq561 Length=46336 Score = 145 bits (160), Expect = 9e-29 Identities = 227/318 (71%), Gaps = 10/318 (3%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| |||| ||||| Sbjct 8533 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 8474 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||| | || |||||| ||| ||| || ||||||| Sbjct 8473 TTCTCCATGAAGTCGAAGGGGTTCGACGACTTGTACACCTTCTCGTTGCCCAGAGCGACC 8414 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || |||||||||||||| ||||| |||||||| ||||||| || ||||||||||| Sbjct 8413 --AGGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCGA 8356 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | |||| ||| || || ||||||||| ||||||||| || Sbjct 8355 GCAGGGCGCATGGAAGGGCCTCGGTCAGGAATTCCTTCTCGATCATGACGGCCTCAGTGA 8296 Query 868929 TGATCTGCCTGGGCACGTCGGC---CGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGC 868985 |||| | ||||| | || | || | |||| ||| ||| || | | ||||||| Sbjct 8295 TGATGT-CCTGGACGCG-CTGCTTGCTTGGGC-GGTTCCTGAGGTGCGAGAACAGCAGGC 8239 Query 868986 AGGCAAAGTCGCAGTGCA 869003 |||| |||||| ||||| Sbjct 8238 AGGCGAAGTCGGTGTGCA 8221 Score = 132 bits (146), Expect = 6e-25 Identities = 146/194 (75%), Gaps = 9/194 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || || || ||| ||| | |||||| ||||| ||| || ||||||||||| |||||| Sbjct 8218 CCCTCATCACGAGAGATAAGCTCGTTGGAAAAGGTGAGACCAGGCATGAGGCCACGCTTC 8159 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | ||| ||| ||| ||||||||||||||||| || ||| Sbjct 8158 TTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATGCCCTCGACGGCAGCGAAG 8099 Query 869300 CCGATGAGCCGCTCGGCAAAGGTG---TCGAGGCCCTCCTTGTTGATCCACTTCATCGCC 869356 ||| || |||| |||| ||||| ||| || || | ||||||||||| ||| Sbjct 8098 GCGACCAGGCGCTGGGCATAGGTGGACTCGCGGTCC------TGGATCCACTTCAGAGCC 8045 Query 869357 CAGTCGGCCTTTTT 869370 ||||||||||| || Sbjct 8044 CAGTCGGCCTTCTT 8031 >seq285 Length=162048 Score = 120 bits (132), Expect = 4e-21 Identities = 212/303 (70%), Gaps = 16/303 (5%) Strand=Plus/Minus Query 1852020 TGACCTCGTCGGGATCGTCGAGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGC 1852079 || |||||||| ||| ||| ||||||||||| | ||||||||| |||||||| Sbjct 63266 TGGCCTCGTCG---TCGAGCAGGTCGATCTTGGAGTTTGGGTCGCTGGCGGACATCTTGC 63210 Query 1852080 CGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGA 1852139 ||| || ||||| || || | ||||| | | |||| ||||| || ||||| | Sbjct 63209 CGCCCTGC---AGGCCAGGGACCATGGGGTTCATGATGTGGGCGCGCTGGCGGTAGCCCA 63153 Query 1852140 GGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACT 1852199 | ||||| || || || || | ||||||||||||| ||||| |||| Sbjct 63152 GCCGGGGCAGCCACTCCTTGGCGGCGGTGAAGAGCTTGCGCTGGTCGACGCCGCCGAACT 63093 Query 1852200 GGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGC 1852259 | ||||||||||||||| ||||||||||||| |||||| || ||||| |||| || Sbjct 63092 GCACGTCGACGTCGAGGTACTGCTCGTCGAGGACCTGCAGGATGGGGTACAGCA---GGC 63036 Query 1852260 TCAGGAGCGG---GTT-GCGGTCCATCTTGACCACCTGAGCGGCGGCC--TTTTGCGCCG 1852313 | |||||| ||| || || | |||||| |||| ||| ||||| || ||| || Sbjct 63035 CCGAGAGCGGCGCGTTGGCCGT-CTGCTTGACGACCTCGGCGCCGGCCCGCTTGGCGTCG 62977 Query 1852314 TGC 1852316 ||| Sbjct 62976 TGC 62974 >seq1354 Length=6196 Score = 114 bits (126), Expect = 2e-19 Identities = 318/470 (68%), Gaps = 22/470 (5%) Strand=Plus/Plus Query 1726693 GGCGGCGGCGCGCACGGCGTCGAGTGCCGTCG-CCACGCTCCCGTCGGTGCCGTTCTTGA 1726751 ||||||||||| | |||||||| || || || ||| | | ||||||||||||||||||| Sbjct 3192 GGCGGCGGCGCCGATGGCGTCGA-TGGCGACGCCCAGGTTGCCGTCGGTGCCGTTCTTGA 3250 Query 1726752 AGCCGATGGCCAGCGGCAGTGCCGACGCCATCTCGCGGTGCACCTGGCTCTCGGTCGTGC 1726811 |||| | || | | ||| |||| || | ||| | ||||| |||| |||||| |||| Sbjct 3251 AGCCCACGGGGAAGGACAGGCCCGAGGCAAGCTCCCTGTGCAGCTGGGACTCGGTGGTGC 3310 Query 1726812 GCGCGCCCACGGCGCCCCACGCCACCAGGTCTGCCA-AATAAGGGGCCACCAGAGGACTG 1726870 | ||||| |||||||| | | | ||| |||| | ||||| | | | | | Sbjct 3311 GGGCGCCGACGGCGCCGACGGAGATGAAGTCGGCCAGGAACTGGGGCGAGATGGTGTC-G 3369 Query 1726871 AGAAACTCGACGGCCACGGGCTGATCGACGGCG-ACGACGAGATC---GCGCAACAGGCG 1726926 || | |||| ||| | |||| || | | || | || || | || | |||| Sbjct 3370 AGCATCTCGGAGGCGATGGGC---ACGCCCTTGCTCGTC-AGGTCCCTGTACATCTGGCG 3425 Query 1726927 GCGCGACGCCGTCAGGCCGTCGGCCAGGCGGCACGACCCGTCGAGGTCGGGGTCGCTGGC 1726986 | | ||||| |||||| | | | | | ||||| ||| |||||| || Sbjct 3426 G-GAGACGC--GCAGGCCCTTGTTGATCTTGAAGCTGTTGTCGACGTCCGGGTCGTTGAT 3482 Query 1726987 CAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGACATAGGCGCGCATGACCACGCA 1727046 |||||||||||| |||||||| ||||| ||||| |||| ||||||||||||| ||||| Sbjct 3483 CAGGCCCTTCCAGCCGACGGTGGTGCGGGGCTTCTCGAGGTAGGCGCGCATGATGACGCA 3542 Query 1727047 AAGCGCGTCGCC-GACCTCGTCTCGGACAAAGGCGCGCAGGC-GTCGGCCATAGTCGACG 1727104 || |||||| ||| | | ||||| | | | || | ||||| | || |||| | Sbjct 3543 CAG---GTCGCCGGACAGCCTGTCGGAGAGCTCCTTG-AGCCTGTCGG-CGTACTCGAGG 3597 Query 1727105 ACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAACCAGCAGCCG 1727154 ||| || |||||||| || || || || |||| || ||||| || Sbjct 3598 GCGGTGGCGGGGTCGTGGATGGAGCAGGGGCCGACGACGACGAGCAGGCG 3647 >seq1743 Length=22384 Score = 102 bits (112), Expect = 1e-15 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1254380 GGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGC 1254439 |||||||||||| || | | ||| ||| |||||| || || || | ||| Sbjct 12608 GGTCTGGATCTCCCGGGAGGAGATGGTGGACTTCTTGTTGTAGGCAGCAAGCTTGGAGGC 12667 Query 1254440 CTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTT 1254499 ||||||| ||| ||| |||| |||||||||||||||||||||| || ||||| | Sbjct 12668 CTCGGTGGCGACGCGCTCGAAGATGTCGTTGACAAACGAGTTCAGGATGGACATGGCACG 12727 Query 1254500 GTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||||||||| ||||||||||| || Sbjct 12728 GTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 12766 >seq1051 Length=172615 Score = 93.3 bits (102), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 344182 GTGGCCTTCCCCACCGAGACCGTCTACGGCCTCGGCGCCGACGCCACGTCTGACGAGGCC 344241 || || |||||||| ||||| ||||||||||||||||| ||||||||| || ||| Sbjct 19186 GTCGCGTTCCCCACAGAGACAGTCTACGGCCTCGGCGCAGACGCCACGCGCAGCGCAGCC 19127 Query 344242 GTGCGGCGCATCTTTGAGGTCAAGGGCCGACCCTCCAACAACCCGATCATTGTGCACGT 344300 || | |||||| | | ||||||||| ||||| | |||||| |||| |||||||| Sbjct 19126 GTCAAGGGCATCTACGCCGCCAAGGGCCGGCCCTCGGATAACCCGCTCATCGTGCACGT 19068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106985656978107