Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1209 120 3e-22 seq1489 104 2e-17 seq427 95.1 1e-14 >seq1209 Length=374226 Score = 120 bits (132), Expect = 3e-22 Identities = 943/1511 (62%), Gaps = 46/1511 (3%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | |||||| || || || || | || || || ||| |||||| ||| | || Sbjct 94200 GTTGACGACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGG 94141 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| || | |||||||| ||||| ||||| | |||| || || |||||| |||| Sbjct 94140 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCAT 94081 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCA 138680 ||| | || || | ||| |||||| ||||||| | ||||||||| Sbjct 94080 CAACAAGCTGTTGCGAATACCAGTCTCCTTGATCTTGGCCTTGAGGGCGTCCCAGTCCCA 94021 Query 138681 CAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACT 138740 || || ||| || ||||||||| ||| |||| | || ||| |||| || Sbjct 94020 CAGGTCAGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATGCCCTGCGACACGGGGCT 93961 Query 138741 GCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGC 138800 ||| ||||| | | |||| || | | | || | ||| || || ||| || Sbjct 93960 GCCCTCGTATGTCTTGTATGTGCCTTCCACCTTGGCAATGTCGCTGGATGCTGTGAGAGC 93901 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTA 138860 | ||| ||| || || ||| || |||| || ||| || ||||||| | ||| | Sbjct 93900 AGCATGGTAGATGGTCTCGAAGATTTGCTTGTTCAGCTCACGCGCCTCGGGGGAATCGAA 93841 Query 138861 CGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCG 138920 ||||| || || | ||| || ||||| || || || ||||| || || | ||| || Sbjct 93840 GGGCATACGAAGAGCCAAGAATGCATCGGCAAGACCCTGAACGCCGACACCAATAGGTCG 93781 Query 138921 ATGGCGCAGATTTGACGCTTTTG-----CGGCTTCGATAGGATAATAGTTTACATCGATG 138975 || |||| || ||| ||| | |||| | || || | ||| |||||||| Sbjct 93780 GTGTCGCA----TGTTGCTGTTGTATGCCTCCTTC-ACCGGGTAGTGGTTGACATCGATA 93726 Query 138976 ATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTAT 139035 || ||||| || || || ||||| |||| ||| | | | | | || | ||| Sbjct 93725 ATCTTGTTCAAGTTGCGGACGACAACCTGAGTGACCTCGTGCAGCTGCTGGAAGTTGTA- 93667 Query 139036 GTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACA--AATCGAGGCTATGT 139093 | ||||| ||| | | ||||| | || | || | ||| || || | || Sbjct 93666 -----GCAGTTGTTGTC-ATAA--TCGAC--GTATGCCGGCAGAGCAATGGAAGCCAGGT 93617 Query 139094 TGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTAC 139153 |||| || || || || || ||| | ||| |||| || |||| || | ||| | Sbjct 93616 TGCAGACAGCGACCTCATCCGGGGCCGAGTACTCGATGATCTCGGTGCAGAGGTTAGAGC 93557 Query 139154 ACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCA 139213 ||| || || | || | || ||||| || ||||| ||||||||| |||| Sbjct 93556 TGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTCCGGTTTGCGTGATCTTTGTACAGCA 93497 Query 139214 TATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTT 139273 || | || | ||||| || || | ||| | ||| | ||| | | || | Sbjct 93496 TAAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGGATGGCATACCACAGCTTCTGGGCCT 93437 Query 139274 ---GTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATC 139330 || | | ||| || | | || |||||||||| |||||||| | || || Sbjct 93436 TCAGTGTCTTACGGCCG---CGGCCCTCCTGCTCGTACTTCTCGTAGAGGGCCTCAAACT 93380 Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390 ||||||||| ||| | || | | |||| || || ||||| || | ||| | | Sbjct 93379 CCTCACCGTAGCAGTCGGCGAGGCCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCAC 93320 Query 139391 CGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGC 139450 ||||| || ||| ||| ||||||||||||| || ||||| | ||| | | | || | Sbjct 93319 CGTTCTTCTCGACCCGCTTCATGAACAGATCAGGGATCCAGAGAGCAAGGAAAAGGTCAC 93260 Query 139451 GCGCCTTCTTATCT--TCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTC 139508 | || || |||| ||| ||| ||| || || ||||| || || || || Sbjct 93259 GAGC--TCGGATCTCCTCCTTACCGTGGTTCTTCCGCAGGTCGAGGAACTCGAAGACATC 93202 Query 139509 AGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATC 139565 ||||||||| || || || || || || | || || || |||||||| || || Sbjct 93201 AGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTC 93142 Query 139566 GACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCC 139625 ||| | || ||| || ||||| || |||| ||| || | ||| | | || || Sbjct 93141 GACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACC 93082 Query 139626 GTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGAT 139682 |||||||| | |||| | | | || || |||| || || || | |||||| Sbjct 93081 GTTGGTGCCAGCGATGTACGAGCCGGTG---GCACGGATACGGTGGACGTTCAGGCCGAT 93025 Query 139683 TCCGCCGCCAAATTTGGATATTAAAACGCA-ATCGCGTAATGTCTCGTATATACCTCTTA 139741 || ||| | | ||||| || | | || || | | ||| || || || || | Sbjct 93024 GCCTCCGGCCATCTTGGAGATCATGGCACATGTCTTG-AGTGTGTCATAGATGCCCTCGA 92966 Query 139742 TGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGG 139801 ||||||| |||| ||| ||| || ||||| || || || || || | ||||| | Sbjct 92965 TGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGGGGCTGGGGAGTGCCAG 92906 Query 139802 CTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTTGTTTCGACATCAATTCGTACGTT 139860 | || || || || || || ||||| | |||||| ||||| | | ||| || Sbjct 92905 CATTGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTT-GACATGAGGTTGTAGGTC 92847 Query 139861 TCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGT 139920 |||||| | ||| | | ||| || ||| || || | || ||||| | ||| || Sbjct 92846 TCGATGACCCTCTCCACATCATCGCCCCAGATGCCAACTGCAACACGCATGATCATGTGC 92787 Query 139921 TGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTG 139980 || ||| ||| | || ||| |||| || || || | ||| ||||||||| Sbjct 92786 TGTGGCCGCTCGACAACTTTGCCGTCGAGCTTCAGGAGGTAGGAGCGCTCGAGGGTCTTG 92727 Query 139981 TAGCCAAAGTA 139991 | || ||||| Sbjct 92726 AACCCGAAGTA 92716 >seq1489 Length=43664 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || |||||||| || || | | Sbjct 23120 ATGCAGATCTTTGTCAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTGGAGTCGTCG 23179 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||| || ||||| || || || || || || || Sbjct 23180 GACACGATTGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 23239 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || ||||||||||| || | | | | || || || ||| Sbjct 23240 CAGCGTCTCATTTTCGCTGGCAAACAGCTGGAAGACGGCCGGACCCTCTCTGACTACAAC 23299 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| ||||| || ||||||||| |||| Sbjct 23300 ATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCG 23334 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || || ||||| || || || Sbjct 22661 ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCC 22720 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | || | ||||| ||||| || ||||| || || || || || ||| Sbjct 22721 TCTGATACTATCGACAACGTAAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGAT 22780 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||| ||||| || || || ||||| | | | | || || || Sbjct 22781 CAGCAGCGCCTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTAC 22840 Query 24881 AACATTCAAAAGGAATCGACACTACAC 24907 ||||| || |||||||| || || ||| Sbjct 22841 AACATCCAGAAGGAATCAACCCTCCAC 22867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || ||||| || || || | Sbjct 22892 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 22951 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| ||||| || ||||| || || || || || || || Sbjct 22952 GATACTATCGACAACGTAAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 23011 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | |||||||| || || ||||| |||||| | | |||| || || ||| Sbjct 23012 CAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGGACTCTGTCCGACTACAAC 23071 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || || || ||| | || | || | ||||| || Sbjct 23072 ATTCAGAAGGAGTCTACTCTGCACCTCGTACTCCGCCTCCGCGGTGG 23118 >seq427 Length=47822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | || Sbjct 19171 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 19230 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || || || Sbjct 19231 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 19290 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||| |||||| | | | | || || || ||| Sbjct 19291 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 19350 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 || || ||||| || || || ||| | ||| |||| |||| || || || Sbjct 19351 ATCCAGAAGGAGTCCACCCTCCACCTCGTGCTGCGCCTGCGTGGTGGTGG 19400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449887078019880