Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq858 141 8e-29 seq1489 89.7 4e-13 >seq858 Length=214325 Score = 141 bits (156), Expect = 8e-29 Identities = 220/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGG 34380 ||||| ||||||| || | | |||| || ||| | |||||| |||||||| ||| Sbjct 169804 GTCTCTGGGTTGTGGCACTTGTGGCACAGGACGAACCTCTTGATGAAGCCATCAAGAAGG 169863 Query 34381 TCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCG 34440 ||||| | ||| || ||||||| ||||||| ||| | || || | ||| ||| Sbjct 169864 TCCTGGAGCTTGGGAGACTCGTGGGCACCGTTGATGATCCAACGATCATCCTTGGGGTCG 169923 Query 34441 ACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGT 34500 | | || || ||||| |||||| | ||||||||||| || ||| | | || || Sbjct 169924 ATGTTGGTCTGGGCGCCAAGCTCGAAGCCGAAGTACTTGATCAAGTAGGAGCCGGGGCGG 169983 Query 34501 CCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTT 34560 | || | || ||||| || | |||||||||||| |||||||| ||||||||||| Sbjct 169984 GCGAGGGACTGGGCGACGCTGGTGAGGTTGACGATGACGGTCTTGATACCGTTGCCCTTG 170043 Query 34561 CCTTCGACCTTGGCGCAGATG-CGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATT 34619 || |||||||| | | || | ||| ||| |||||||||||||| | ||| |||| Sbjct 170044 CCCTCGACCTTTG-TCTGAAGACGCTCCATCTTGTAGCGGTAGAAGGGGTCGCTGACATC 170102 Query 34620 GCGGTTAACGTT 34631 ||| |||||| Sbjct 170103 GCGACGAACGTT 170114 >seq1489 Length=43664 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | |||||||| ||||| ||| |||| ||| | Sbjct 22892 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 22951 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | | ||||| |||||| ||||| || ||| | ||| || || Sbjct 22952 GATACTATCGACAACGTAAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 23011 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||| ||||||| | | || || | || |||||| Sbjct 23012 CAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGGACTCTGTCCGACTACAAC 23071 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 ||||| || || ||||| ||||| Sbjct 23072 ATTCAGAAGGAGTCTACTCTGCAC 23095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412832186050403