Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1266 201 2e-45 seq285 159 5e-33 seq1209 152 8e-31 seq561 145 1e-28 seq1113 138 2e-26 seq1743 111 2e-18 seq1051 96.9 5e-14 seq1354 87.8 3e-11 >seq1266 Length=56925 Score = 201 bits (222), Expect = 2e-45 Identities = 359/520 (69%), Gaps = 8/520 (2%) Strand=Plus/Minus Query 2018925 GAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCACGCCGTTGCCTAC 2018984 || ||||||||||| | | ||||||||| |||| || |||| | | | | | Sbjct 49611 GAGAAGTACCGCCCCATCTTCCTCGACGACGTCGTCGGAAACGTAGAGACGATCGAGCGC 49552 Query 2018985 CTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGGCCCGCCCGGC 2019044 |||||| | || || ||||||||||| || || | | ||| ||| ||| Sbjct 49551 CTCAAGATCATAGCAAAAGATGGCAACATGCCGCACGTCATCATCAGCGGCATGCCGGGC 49492 Query 2019045 ACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGAC 2019104 | || ||||| || ||| | ||||||||||| ||| | || | ||| | | Sbjct 49491 ATAGGAAAGACGACAAGCGTGCTCTGCCTGGCGCGGCAGCTGCTCGGAGACGCCTACAAG 49432 Query 2019105 GAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATC 2019164 ||||| ||||| || ||||| || || |||||||||||| | ||||||||||| | Sbjct 49431 GAGGCAGTGCTGGAGCTCAACGCCTCGGACGAGCGCGGCATCGACGTCGTGCGCAACCGG 49372 Query 2019165 ATCAAG--CATCACGCTTCGAAAAGAATC-GAC-CTGCCGCCCGGCCGCCACAAGGTGAT 2019220 |||||| | || ||| | ||||| ||| ||||| | ||||| |||||| | | Sbjct 49371 ATCAAGGGCTTCGCGC----AGAAGAAGGTGACGCTGCCCGCGGGCCGGCACAAGCTCGT 49316 Query 2019221 CATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCAT 2019280 |||||| || ||||||||| || | ||||||| || |||||||| || | ||| || Sbjct 49315 CATCCTGGACGAGGCCGACAGCATGACGTCGGGCGCGCAGCAGGCGCTGAGGCGGACGAT 49256 Query 2019281 GGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCAT 2019340 ||| | ||| ||||||||||||| || || | || |||||| ||| | | |||| Sbjct 49255 GGAGATCTACTCCAACACGACGCGCTTCGCCTTCGCGTGCAACCAGTCCAACAAGATCAT 49196 Query 2019341 CGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGAT 2019400 ||| | || ||| || ||||||||| |||| | |||||||| || |||| |||| | Sbjct 49195 CGAGCCGCTGCAGTCGCGGTGCGCCATCCTGCGGTACGCGCGCCTGACGGACGGCCAGGT 49136 Query 2019401 CGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 || | ||| ||| |||| ||||| ||||| |||||| Sbjct 49135 CGTCAAGCGCCTGATGCAGATCATCGAGGCCGAGAAGGTC 49096 >seq285 Length=162048 Score = 159 bits (176), Expect = 5e-33 Identities = 263/374 (70%), Gaps = 13/374 (3%) Strand=Plus/Minus Query 2411292 GAGGATGGCCAAGAGGCCGTTGCCTTCGGCGCGCCCGTCCACCGAGTAGGCCCGACGGAT 2411351 || || ||| | || ||||||||| |||| | || | ||| | | |||| ||| Sbjct 63340 GACGAAGGCGAGGACGCCGTTGCCCTCGGGGACCCTGGGCACGCACTCGGCCTTCTTGAT 63281 Query 2411352 CTT---GGCGCGGATGACCTCGTCGCAATCGTCGAGATCAATCTTGGAGGCGGCCTCGCT 2411408 ||| | || | || |||||||| ||| || || ||||||||| | ||||| Sbjct 63280 CTTCCTGACGACGGTGGCCTCGTCG---TCGAGCAGGTCGATCTTGGAGTTTGGGTCGCT 63224 Query 2411409 GGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCG 2411468 |||| |||||||||| ||| ||||| || |||| ||||| | | |||| ||| Sbjct 63223 GGCGGACATCTTGCCGCCCTGC---AGGCCAGGGACCATGGGGTTCATGATGTGGGCGCG 63167 Query 2411469 CTTGCGGTAGCCCAGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTC 2411528 || ||||||||||||| ||||| || || || |||| |||||||||||| Sbjct 63166 CTGGCGGTAGCCCAGCCGGGGCAGCCACTCCTTGGCGGCGGTGAAGAGCTTGCGCTGGTC 63107 Query 2411529 GCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGG 2411588 | ||||| ||||| ||||||||||||||| ||||||||||||| |||||| || || Sbjct 63106 GACGCCGCCGAACTGCACGTCGACGTCGAGGTACTGCTCGTCGAGGACCTGCAGGATGGG 63047 Query 2411589 GTAGACGAGGTTGCTGAGCGGCGGGTT-GCGGTCCATCTTGACCACCTGGGCGGCGGCC- 2411646 ||| | ||| |||||||| ||| || || | |||||| |||| |||| ||||| Sbjct 63046 GTACAGCAGGCCCGAGAGCGGCGCGTTGGCCGT-CTGCTTGACGACCTCGGCGCCGGCCC 62988 Query 2411647 -TTTTGCGCCGTGC 2411659 || ||| ||||| Sbjct 62987 GCTTGGCGTCGTGC 62974 >seq1209 Length=374226 Score = 152 bits (168), Expect = 8e-31 Identities = 336/504 (67%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||||||||| || || |||| ||| ||||| || |||||||| | ||||||||| Sbjct 93147 CTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGAGTGATGCCGTTGGA 93088 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||||||||| || | ||| | ||| | ||| || | ||| || | ||| Sbjct 93087 GGTACCGTTGGTGCCAGCGATGTACGAGCCGGTGGCACGGATACGGTGGACGTTCAGGCC 93028 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| |||||| ||||||||| | || || | || || || || ||||||||||| Sbjct 93027 GATGCCTCCGGCCATCTTGGAGATCATGGCACATGTCTTGAGTGTGTCATAGATGCCCTC 92968 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| || || || || | | ||||| Sbjct 92967 GATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTGGGGCTGGGGAGTGCC 92908 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 |||||||| || ||||||| || ||| | ||| | |||||| | |||||| Sbjct 92907 AGCATTGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGACATGAGGTTGTAGGT 92848 Query 2073840 GGCGAGCACGCGCGCCAGCGCGTCTTGGACGTCGGCAAACCCATAGTGGCCGATGGCGAC 2073899 ||| || | | ||| | || | | || || ||| | || || Sbjct 92847 CTCGATGACCCTCTCCA---CATCATCG------------CCCCAGATGCCAACTGCAAC 92803 Query 2073900 GCGCATGATCATGTACTGGGGTCGCTCGACGAC---GGCGTCGCGCACCTTGGTCAGGTA 2073956 ||||||||||||| ||| || |||||||| || | ||||| | ||| ||||| Sbjct 92802 ACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTGCCGTCG---AGCTTCAGGAGGTA 92746 Query 2073957 GGACCGACGCAGGGTCGCCAGGCCAAAGTACGAGTAGGCCAGGTCGCGCTCGTGGCGGAT 2074016 ||| || |||||| | || ||||| |||| | | |||||| || | | || Sbjct 92745 GGAGCGCTCGAGGGTCTTGAACCCGAAGTATTGGTAGCCGAAGTCGCGATCATAGACAAT 92686 Query 2074017 GGCGGCGTCGAGGGCCTCCTTGTG 2074040 ||| | ||||| |||||||||| Sbjct 92685 GGCCGAGTCGAACTCCTCCTTGTG 92662 Score = 113 bits (124), Expect = 7e-19 Identities = 292/445 (66%), Gaps = 12/445 (3%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTT 2071631 ||| || || ||||||||| ||||| | | || ||||||||||||||| |||||| Sbjct 93586 ACTCGATGATCTCGGTGCAGAGGTTAGAG--CTGCGGATGGTGCCCAGGTTCTTCTGGTT 93529 Query 2071632 GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGC 2071691 ||| || |||| || || |||| |||||| |||| ||| |||||| |||| || Sbjct 93528 GCTCTTCCGGTTTGCGTGATCTTTGTACAGCATAAAGGGGTTACCAGTCTCGGTCTGAGC 93469 Query 2071692 CGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAG-GTCCT-CG--CGCGGCCCT 2071747 | | |||||| |||| | || |||| || ||| | || ||||||||| Sbjct 93468 CTCAAGGATGGCATACCACA----GCTTCTGGGCCTTCAGTGTCTTACGGCCGCGGCCCT 93413 Query 2071748 NNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGG 2071807 ||||||| ||||| | | |||| ||| ||| ||||| | Sbjct 93412 CCTGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCCG 93353 Query 2071808 GCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACA 2071867 | |||| ||||| | || | |||||| ||| || | || || ||| |||| Sbjct 93352 GGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAACA 93293 Query 2071868 GGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGT 2071927 | || |||| || | || || || || || ||| |||||||||| ||||||| Sbjct 93292 GATCAGGGATCCAGAGAGCAAGGAAAAGGTCACGAGCTCGGATCTCCTCCTTACCGTGGT 93233 Query 2071928 TCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAA 2071987 |||| ||||||||| | |||| || || |||||||||||||| ||||| || | Sbjct 93232 TCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGA 93173 Query 2071988 AGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||| || |||||| ||| || Sbjct 93172 AGGCACCGGGACGCTTGTTGCCACC 93148 >seq561 Length=46336 Score = 145 bits (160), Expect = 1e-28 Identities = 190/260 (73%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| || || || || ||| |||||| |||||||||||||| ||| Sbjct 8541 TGACGCCGGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGA 8482 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCC-- 794008 | ||||| |||||| | ||| ||||| | || | ||| ||||||| || Sbjct 8481 GGGAGATGTTCTCCATGAAGTCGAAGGGGTTCGACGACTTGTACACCTTCTCGTTGCCCA 8422 Query 794009 GAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 ||||||| || ||||||||||||||||| ||||||||||| ||||||| || ||| Sbjct 8421 GAGCGACC--AGGAGGCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTTGGAGTT 8364 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| || || || || | |||| | | || || ||||||||| |||||| Sbjct 8363 CATGCCGAGCAGGGCGCATGGAAGGGCCTCGGTCAGGAATTCCTTCTCGATCATGACGGC 8304 Query 794129 CTCGATGATGATCTGCCTGG 794148 ||| ||||||| | ||||| Sbjct 8303 CTCAGTGATGATGT-CCTGG 8285 Score = 113 bits (124), Expect = 7e-19 Identities = 140/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || || || ||| ||| | |||||| |||| ||| || ||||||||||| |||||| Sbjct 8218 CCCTCATCACGAGAGATAAGCTCGTTGGAAAAGGTGAGACCAGGCATGAGGCCACGCTTC 8159 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| ||||||| ||| ||| ||| ||||||||||||||||| || ||| Sbjct 8158 TTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATGCCCTCGACGGCAGCGAAG 8099 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| || |||| |||| | ||| | || || | ||||||||||| ||||| Sbjct 8098 GCGACCAGGCGCTGGGCATAGGTGGACTCGCGGTC---CTGGATCCACTTCAGAGCCCAG 8042 Query 794521 TCTGCCTTTTT 794531 || ||||| || Sbjct 8041 TCGGCCTTCTT 8031 >seq1113 Length=268234 Score = 138 bits (152), Expect = 2e-26 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | ||||| ||| | ||||| |||||||||||| | ||||||||| Sbjct 154271 AGGTCGACCAGGAGATGCTCTTCGAGATCATCCTTGCCGCCAACTACATGGACATCAAGG 154212 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 |||| || ||| | || |||||||| || || ||| | |||||||||||||| || |||| Sbjct 154211 CCCTGCTTGATGTCGGCTGCAAGACAGTCGCAAACATGATCAAGGGCAAGTCTCCTGAGG 154152 Query 2035732 ACATCCGCAAGACCTTTAACATCA 2035755 | |||||||||||||| ||||||| Sbjct 154151 AGATCCGCAAGACCTTCAACATCA 154128 >seq1743 Length=22384 Score = 111 bits (122), Expect = 2e-18 Identities = 122/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 1485546 GGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCG-GCCGG 1485604 |||||||||||| |||| | ||| ||| |||||| || || || || | || Sbjct 12608 GGTCTGGATCTCCCGGGAGGAGATGGTGGACTTCTTGTT-GTAGGCAGCAAGCTTGGAGG 12666 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 |||||||| ||| ||| |||| |||||||||||||||||||||| ||| ||||| | Sbjct 12667 CCTCGGTGGCGACGCGCTCGAAGATGTCGTTGACAAACGAGTTCAGGATGGACATGGCAC 12726 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| || ||||||||| ||||||||||| || Sbjct 12727 GGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 12766 >seq1051 Length=172615 Score = 96.9 bits (106), Expect = 5e-14 Identities = 95/120 (79%), Gaps = 2/120 (2%) Strand=Plus/Minus Query 2233091 GTCGCCTTTCCCACCGAGACCGTCTATGGCCTCGGCGCCGACGCGGCGT-CAGACGAGGC 2233149 ||||| || ||||| ||||| ||||| ||||||||||| ||||| || ||| || || Sbjct 19186 GTCGCGTTCCCCACAGAGACAGTCTACGGCCTCGGCGCAGACGCCACGCGCAG-CGCAGC 19128 Query 2233150 CGTACAGCGCATCTTTGACGCCAAGGGCCGACCGTCCAACAACCCGATCATCGTGCACGT 2233209 ||| || |||||| | |||||||||||| || || | |||||| ||||||||||||| Sbjct 19127 CGTCAAGGGCATCTACGCCGCCAAGGGCCGGCCCTCGGATAACCCGCTCATCGTGCACGT 19068 >seq1354 Length=6196 Score = 87.8 bits (96), Expect = 3e-11 Identities = 102/136 (75%), Gaps = 4/136 (3%) Strand=Plus/Plus Query 2175039 GCGGCGGTGCGCACGGCATCGA--GCGCCGTTGCCACGCTGCCGTCGGTGCCGTTTTTAA 2175096 ||||||| || | ||| |||| ||| || ||| | |||||||||||||||| || | Sbjct 3193 GCGGCGGCGCCGATGGCGTCGATGGCGACGC--CCAGGTTGCCGTCGGTGCCGTTCTTGA 3250 Query 2175097 ACCCGACCGGCAACGGCAGCGCCGACGCCATTTCGCGGTGCACCTGGCTCTCGGTGGTGC 2175156 | || || || || | ||| |||| || | || | ||||| |||| ||||||||||| Sbjct 3251 AGCCCACGGGGAAGGACAGGCCCGAGGCAAGCTCCCTGTGCAGCTGGGACTCGGTGGTGC 3310 Query 2175157 GCGCGCCCACGGCGCC 2175172 | ||||| |||||||| Sbjct 3311 GGGCGCCGACGGCGCC 3326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916047373196369