Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1489 100 2e-16 seq427 93.3 3e-14 >seq1489 Length=43664 Score = 100 bits (110), Expect = 2e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || || || ||| || || |||||||| || ||||| || || | Sbjct 23335 ACGCAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCC 23276 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| ||||| || || ||||| | ||||||||| ||| | || | || || || Sbjct 23275 GTCTTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTT 23216 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || || | || | |||| ||||| || ||||| || | ||||| Sbjct 23215 GTCCTGAATCTT-TGACTTGACGTTGTCAATCGTGTCCGACGACTCCACCTCGAGCGTGA 23157 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || || | || || |||||||||||||| Sbjct 23156 TCGTCTTCCCCGTCAGGGTCTTGACAAAGATCTGCAT 23120 >seq427 Length=47822 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || || | ||| | || || ||| ||| || || |||||||| |||| Sbjct 19399 CACCACCACGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 19340 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||| ||||| | || || | || || ||||| || |||| |||||||| ||| | | Sbjct 19339 AGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGG 19280 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || || || | ||| ||| | ||||||| || ||| Sbjct 19279 GGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTGTCGGAAGACTCC 19221 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || || || || | || || || ||||||||||| Sbjct 19220 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328696504624320