Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq709 168 8e-37 >seq709 Length=37314 Score = 168 bits (186), Expect = 8e-37 Identities = 277/397 (70%), Gaps = 2/397 (1%) Strand=Plus/Minus Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGG 147165 ||||| ||||| | ||||||||||||||||||||||| |||||||||||| Sbjct 18300 ACGTAGAACTGCGCGAACATGTGGCACGGCGGCAGCGCCATCTTCTTGAGGTCCGCGGGG 18241 Query 147166 TTCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACC 147225 ||||| || | | | || | | | |||||| || | | || | ||| ||| Sbjct 18240 TTCCACGCGCTCATGATGATGCGGCGGTCGTACGGGTTCGTCCTCAGCTTGTGGATCACC 18181 Query 147226 CACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCC 147285 ||||||||| |||||||||||| |||||| | || | ||| |||||| ||| Sbjct 18180 TCGGCCAGCTGGTCGACGCCCTGGCCCGCGTAGTCGGCCCTGGCGTCTACGTACTCGGCG 18121 Query 147286 CCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAG 147345 |||||||||| ||||||||| |||||||| || || |||||||||| || | ||| | Sbjct 18120 CCAAAGTGCCGCCACTGGAACCCGTACACGGGGCCAAGGTCGCCGGCCTCGCGGTG-GCC 18062 Query 147346 AAGCCCG-CCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTT 147404 |||||| | | | ||| ||||| | || |||| | |||||||||| || |||| Sbjct 18061 CAGCCCGACGCTGTCGAGGTACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACCCCCTG 18002 Query 147405 GGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAAC 147464 | |||||| | || ||| |||| |||||||| ||||||||| | | || Sbjct 18001 CTCCGAGAGCGACAGCGACGAGGTGTCGCCCGATATGAACCACAGCAGCTCCGCGAGGAC 17942 Query 147465 CCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGG 147501 | || || ||||| | ||| |||||||| || ||| Sbjct 17941 CGCCTTCTGGAAGACGCGCTTCGTGGTCAGGAGTGGG 17905 Score = 127 bits (140), Expect = 2e-24 Identities = 203/291 (70%), Gaps = 9/291 (3%) Strand=Plus/Minus Query 146802 GTGCGGGTGGTAGCCCTCGAGGGCAAAATCTTCTGCCCTGAAATCGTCTATGT------C 146855 |||||||| || |||| || | ||||| || || | | |||||||| | Sbjct 18703 GTGCGGGTTATACCCCTTGACCTCGAAATCCTCGACCTTCCAGCCGTCTATGCTGCCGCC 18644 Query 146856 CTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAAT 146915 || | ||||| | | ||| |||| |||||| || || | ||| ||||||| | Sbjct 18643 CTTCTCCCGCTTGA---TCTCCAGCTCCGGGAAGTCGCGCGGCTCCCTCTCCAGCTGCAC 18587 Query 146916 TTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTC 146975 || | || ||||||| ||||||||||||||| |||| | |||| | | Sbjct 18586 CCGGAGCGCGTCGACGTGGTCCGCGTAGACGTGCGCGTCGCCCATGACGTGCGTGAGGCT 18527 Query 146976 CCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTAT 147035 |||||| ||| || |||||| || | ||||| || ||||||||||||||||| || Sbjct 18526 CCCCGGGACGAGGTCGCACACGTGCGCGATCATGTGCGTCAGCAGCGAGTAGCTGGCGAT 18467 Query 147036 GTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 |||||| || || |||||||||||||| | || | ||||||||||||||| Sbjct 18466 GTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCGCTGGTACAGCTGGCA 18416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583474353674400