Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20]
1,871 sequences; 55,029,878 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq1266 194 2e-43
seq1209 168 1e-35
seq561 140 5e-27
seq1354 95.1 2e-13
seq1743 89.7 7e-12
>seq1266
Length=56925
Score = 194 bits (214), Expect = 2e-43
Identities = 354/516 (69%), Gaps = 2/516 (0%)
Strand=Plus/Plus
Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869
||||| ||||| ||| |||| |||||| | ||| ||| |||| || ||||||
Sbjct 49097 ACCTTCTCGGCCTCGATGATCTGCATCAGGCGCTTGACGACCTGGCCGTCCGTCAGGCGC 49156
Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929
| | ||||||||||| || || |||||| | |||||||| | | ||| ||||
Sbjct 49157 GCGTACCGCAGGATGGCGCACCGCGACTGCAGCGGCTCGATGATCTTGTTGGACTGGTTG 49216
Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989
|| || | ||| || |||||||| |||| | | ||||| ||| || || |||||
Sbjct 49217 CACGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATCGTCCGCCTCAGCGCCTGC 49276
Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGC-GCCCGTG 333048
|| || ||| ||| | || |||||||||||| ||||||| || |||||| | ||||| |
Sbjct 49277 TGCGCGCCCGACGTCATGCTGTCGGCCTCGTCCAGGATGACGAGCTTGTGCCGGCCCGCG 49336
Query 333049 CGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCC 333108
||||| ||| | ||| ||| | ||||| |||||||||||||| | |||
Sbjct 49337 -GGCAGCGTCACCTTCTTCTGCGCGAAGCCCTTGATCCGGTTGCGCACGACGTCGATGCC 49395
Query 333109 GCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGAC 333168
|||||||||||| |||||||| || ||||| ||||| | | ||| | || | ||
Sbjct 49396 GCGCTCGTCCGAGGCGTTGAGCTCCAGCACTGCCTCCTTGTAGGCGTCTCCGAGCAGCTG 49455
Query 333169 GCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAG 333228
||||||||||| | ||| || ||||| || |||| ||| || | | ||
Sbjct 49456 CCGCGCCAGGCAGAGCACGCTTGTCGTCTTTCCTATGCCCGGCATGCCGCTGATGATGAC 49515
Query 333229 GTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCC 333288
|| ||||||||||| || || | ||||||| | | | | |||| ||
Sbjct 49516 GTGCGGCATGTTGCCATCTTTTGCTATGATCTTGAGGCGCTCGATCGTCTCTACGTTTCC 49575
Query 333289 GACAATGTCGTCGAGCACCATTGGGCGGTACTTTTC 333324
||| | ||||||||| | || ||||||||||| ||
Sbjct 49576 GACGACGTCGTCGAGGAAGATGGGGCGGTACTTCTC 49611
>seq1209
Length=374226
Score = 168 bits (186), Expect = 1e-35
Identities = 340/502 (68%), Gaps = 17/502 (3%)
Strand=Plus/Plus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||||| ||||| | ||||| | | | || ||||| |||||| |||||
Sbjct 92662 CACAAGGAGGAGTTCGACTCGGCCATTGTCTATGATCGCGACTTCGGCTACCAATACTTC 92721
Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800
|| | |||| | || |||||||| | ||| || || | || ||||||||
Sbjct 92722 GGGTTCAAGACCCTCGAGCGCTCCTACCTC-CTGAAGCTCGACGGCAAAGTTGTCGAGCG 92780
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
||| ||| | ||| |||||||||| || ||||| | |||| ||| |
Sbjct 92781 GCCACAGCACATGATCATGCGTGTTGCAGTTGGCA--TCTGGGG----------CGATGA 92828
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGC 259920
|| ||||| || ||| |||||| | |||||| | |||| |||||| ||
Sbjct 92829 TG---TGGAGAGGGTCATCGAGACCTACAACCTCATGTCAAACAAGTTCTTCACCCATGC 92885
Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980
||||||| || || ||||| ||||| || | || ||| || || ||||| || |
Sbjct 92886 CTCGCCCACACTATTCAATGCTGGCACTCCCCAGCCCCAGCTGTCATCTTGCTTCCTCGT 92945
Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040
|||||||||| || |||||||||||||||||||| |||||| || || | ||
Sbjct 92946 CGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACACTCAAGACATGTGCCATGAT 93005
Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100
||||||| |||||| |||||||| | || ||| | || ||| | ||| | ||
Sbjct 93006 CTCCAAGATGGCCGGAGGCATCGGCCTGAACGTCCACCGTATCCGTGCCACCGGCTCGTA 93065
Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160
| | || ||||||||||| ||||||||| | |||||||| || || || ||| |
Sbjct 93066 CATCGCTGGCACCAACGGTACCTCCAACGGCATCACTCCCATGCTGCGAGTCTTCAACAA 93125
Query 260161 CACGGCGCGCTACGTCGACCAG 260182
||| || || || |||||||||
Sbjct 93126 CACTGCCCGTTATGTCGACCAG 93147
>seq561
Length=46336
Score = 140 bits (154), Expect = 5e-27
Identities = 240/340 (71%), Gaps = 15/340 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| |||||||| || ||| ||||| || || |||||||| || ||| |||| |
Sbjct 7623 GATCTGGCAAATGTAC-AAGAAGCATGAGGCTTCTTTCTGGACCGCTGAAGAGATCGATC 7681
Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887
|| | || |||| ||||| ||| ||| ||| || ||||| | |||
Sbjct 7682 TCTCCAAGGATCTCCACG----ACTGGAGCAACCGCCTGACCGATGATGAGCGTTACTTC 7737
Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947
|| ||| |||||||||| || |||||| ||||||||||| |||||||||||
Sbjct 7738 GTCTCCCACATCCTCGCCTTCTT-CGCCGCTTCAGATGGCATCGTCAACGAGAACCTGGT 7796
Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007
| ||||| | ||||||||| | || ||||| |||| || ||||| ||||||||
Sbjct 7797 GGAGCGCTTCAGCGGCGAGGTCCAAATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGAT 7856
Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067
| || || ||||||||||| || || || || | || || ||||||||| |||||||
Sbjct 7857 CATGATGGAGAACATCCACTCCGAGACGTATTCTTTGCTCATTGACACCTACATCAAGGA 7916
Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106
|| | | || | || |||||| | |||||| |||||
Sbjct 7917 GCCCGCCCAG-CGCACGCACCTCCTCAACGCCATTGACAC 7955
Score = 127 bits (140), Expect = 3e-23
Identities = 183/253 (72%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||||||||| ||||||||| || || | | |||| | || || ||
Sbjct 8292 ATCATCACTGAGGCCGTCATGATCGAGAAGGAATTCCTGACCGAGGCCCTTCCATGCGCC 8351
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| ||||||||||| ||| | |||||| ||||||||||| || |||||||||||||
Sbjct 8352 CTGCTCGGCATGAACTCCAAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCCGACCGCC 8409
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
| || | || || ||| || ||||| ||| | || | ||||| ||| | |||
Sbjct 8410 TCCTGGTCGCTCTGGGCAACG-AGAAGGTGTACAAGTCGTCGAACCCCTTCGACTTCATG 8468
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761
||| ||||| |||| |||||||||||||| |||||| || || || || |||
Sbjct 8469 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 8528
Query 1456762 AAGGCCGGCGTCA 1456774
|||||||||||||
Sbjct 8529 AAGGCCGGCGTCA 8541
Score = 120 bits (132), Expect = 4e-21
Identities = 144/190 (76%), Gaps = 8/190 (4%)
Strand=Plus/Plus
Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCC--TCGACACTTTGCCGA 1456180
|| |||||||||||||| ||||||||||| | ||| || || || || |||| |
Sbjct 8031 AAGAAGGCCGACTGGGCTCTGAAGTGGATCCA---GGACCGCGAGTCCAC-CTATGCCCA 8086
Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239
||| || |||| ||| || || |||||||||||||| ||| ||| ||| | ||||
Sbjct 8087 GCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCCTTCGCCTCCAT 8146
Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299
||| |||||||||||||| ||||||||||| |||| || |||| |||||| |||||
Sbjct 8147 CTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTC-TCACCTTTTCCAACGAGCTTATCT 8205
Query 1456300 GTCGCGACGA 1456309
||| || ||
Sbjct 8206 CTCGTGATGA 8215
>seq1354
Length=6196
Score = 95.1 bits (104), Expect = 2e-13
Identities = 104/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Minus
Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827
||||||||||| || |||||||||||| |||| ||||| | ||| | || |||| |||
Sbjct 3326 GGCGCCGTCGGCGCCCGCACCACCGAGTCCCAGCTGCACAGGGAGCTTGCCTCGGGCCTG 3267
Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886
| | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| ||
Sbjct 3266 TCCTTCCCCGTGGGCTTCAAGAACGGCACCGACGGCAACCTGGGCGTC-GCCATCGACGC 3208
Query 165887 CGTGCGCACTGCCGCC 165902
| | || | ||||||
Sbjct 3207 CATCGGCGCCGCCGCC 3192
>seq1743
Length=22384
Score = 89.7 bits (98), Expect = 7e-12
Identities = 123/168 (73%), Gaps = 12/168 (7%)
Strand=Plus/Minus
Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979
|| ||||||||||| |||||| || | | ||| |||||| ||||||| |||
Sbjct 12766 GTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC-TCCAACCGTGCCATGTCCATC 12713
Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC---GCCTG 725036
|||||||||||||||||||||| |||| ||| ||| |||||||||| || || ||
Sbjct 12712 CTGAACTCGTTTGTCAACGACATCTTCGAGCGCGTCGCCACCGAGGCC--TCCAAGCTTG 12655
Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084
|| || ||||||| ||| ||| | | || ||||||||||||
Sbjct 12654 CTGC-CTACAACAAGAAGTCCACCATCTCCTCCCGGGAGATCCAGACC 12608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177630738611102
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |