Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1266 194 2e-43 seq1209 168 1e-35 seq561 140 5e-27 seq1354 95.1 2e-13 seq1743 89.7 7e-12 >seq1266 Length=56925 Score = 194 bits (214), Expect = 2e-43 Identities = 354/516 (69%), Gaps = 2/516 (0%) Strand=Plus/Plus Query 332810 ACCTTTTCGGCGGCGACAATCTCGCGCAGGCGACCGGCGATTTGGGCGTCAGTGAGGCGC 332869 ||||| ||||| ||| |||| |||||| | ||| ||| |||| || |||||| Sbjct 49097 ACCTTCTCGGCCTCGATGATCTGCATCAGGCGCTTGACGACCTGGCCGTCCGTCAGGCGC 49156 Query 332870 ACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACGTGTTG 332929 | | ||||||||||| || || |||||| | |||||||| | | ||| |||| Sbjct 49157 GCGTACCGCAGGATGGCGCACCGCGACTGCAGCGGCTCGATGATCTTGTTGGACTGGTTG 49216 Query 332930 CAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGT 332989 || || | ||| || |||||||| |||| | | ||||| ||| || || ||||| Sbjct 49217 CACGCGAAGGCGAAGCGCGTCGTGTTGGAGTAGATCTCCATCGTCCGCCTCAGCGCCTGC 49276 Query 332990 TGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGC-GCCCGTG 333048 || || ||| ||| | || |||||||||||| ||||||| || |||||| | ||||| | Sbjct 49277 TGCGCGCCCGACGTCATGCTGTCGGCCTCGTCCAGGATGACGAGCTTGTGCCGGCCCGCG 49336 Query 333049 CGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCC 333108 ||||| ||| | ||| ||| | ||||| |||||||||||||| | ||| Sbjct 49337 -GGCAGCGTCACCTTCTTCTGCGCGAAGCCCTTGATCCGGTTGCGCACGACGTCGATGCC 49395 Query 333109 GCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGAC 333168 |||||||||||| |||||||| || ||||| ||||| | | ||| | || | || Sbjct 49396 GCGCTCGTCCGAGGCGTTGAGCTCCAGCACTGCCTCCTTGTAGGCGTCTCCGAGCAGCTG 49455 Query 333169 GCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGCCAGCAAGAG 333228 ||||||||||| | ||| || ||||| || |||| ||| || | | || Sbjct 49456 CCGCGCCAGGCAGAGCACGCTTGTCGTCTTTCCTATGCCCGGCATGCCGCTGATGATGAC 49515 Query 333229 GTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTGCTCGTTGCC 333288 || ||||||||||| || || | ||||||| | | | | |||| || Sbjct 49516 GTGCGGCATGTTGCCATCTTTTGCTATGATCTTGAGGCGCTCGATCGTCTCTACGTTTCC 49575 Query 333289 GACAATGTCGTCGAGCACCATTGGGCGGTACTTTTC 333324 ||| | ||||||||| | || ||||||||||| || Sbjct 49576 GACGACGTCGTCGAGGAAGATGGGGCGGTACTTCTC 49611 >seq1209 Length=374226 Score = 168 bits (186), Expect = 1e-35 Identities = 340/502 (68%), Gaps = 17/502 (3%) Strand=Plus/Plus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||||| ||||| | ||||| | | | || ||||| |||||| ||||| Sbjct 92662 CACAAGGAGGAGTTCGACTCGGCCATTGTCTATGATCGCGACTTCGGCTACCAATACTTC 92721 Query 259742 GGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAAAGTGCG-CGATATTGTCGTCGAGCG 259800 || | |||| | || |||||||| | ||| || || | || |||||||| Sbjct 92722 GGGTTCAAGACCCTCGAGCGCTCCTACCTC-CTGAAGCTCGACGGCAAAGTTGTCGAGCG 92780 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 ||| ||| | ||| |||||||||| || ||||| | |||| ||| | Sbjct 92781 GCCACAGCACATGATCATGCGTGTTGCAGTTGGCA--TCTGGGG----------CGATGA 92828 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGC 259920 || ||||| || ||| |||||| | |||||| | |||| |||||| || Sbjct 92829 TG---TGGAGAGGGTCATCGAGACCTACAACCTCATGTCAAACAAGTTCTTCACCCATGC 92885 Query 259921 GACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTT 259980 ||||||| || || ||||| ||||| || | || ||| || || ||||| || | Sbjct 92886 CTCGCCCACACTATTCAATGCTGGCACTCCCCAGCCCCAGCTGTCATCTTGCTTCCTCGT 92945 Query 259981 GGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCAT 260040 |||||||||| || |||||||||||||||||||| |||||| || || | || Sbjct 92946 CGACATGAAGGAGGACAGCATCGAGGGCATCTATGACACACTCAAGACATGTGCCATGAT 93005 Query 260041 CTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTA 260100 ||||||| |||||| |||||||| | || ||| | || ||| | ||| | || Sbjct 93006 CTCCAAGATGGCCGGAGGCATCGGCCTGAACGTCCACCGTATCCGTGCCACCGGCTCGTA 93065 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | | || ||||||||||| ||||||||| | |||||||| || || || ||| | Sbjct 93066 CATCGCTGGCACCAACGGTACCTCCAACGGCATCACTCCCATGCTGCGAGTCTTCAACAA 93125 Query 260161 CACGGCGCGCTACGTCGACCAG 260182 ||| || || || ||||||||| Sbjct 93126 CACTGCCCGTTATGTCGACCAG 93147 >seq561 Length=46336 Score = 140 bits (154), Expect = 5e-27 Identities = 240/340 (71%), Gaps = 15/340 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| |||||||| || ||| ||||| || || |||||||| || ||| |||| | Sbjct 7623 GATCTGGCAAATGTAC-AAGAAGCATGAGGCTTCTTTCTGGACCGCTGAAGAGATCGATC 7681 Query 1455835 TCGGCGCCGA----CACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTC 1455887 || | || |||| ||||| ||| ||| ||| || ||||| | ||| Sbjct 7682 TCTCCAAGGATCTCCACG----ACTGGAGCAACCGCCTGACCGATGATGAGCGTTACTTC 7737 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 || ||| |||||||||| || |||||| ||||||||||| ||||||||||| Sbjct 7738 GTCTCCCACATCCTCGCCTTCTT-CGCCGCTTCAGATGGCATCGTCAACGAGAACCTGGT 7796 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 | ||||| | ||||||||| | || ||||| |||| || ||||| |||||||| Sbjct 7797 GGAGCGCTTCAGCGGCGAGGTCCAAATCCCTGAGGCCCGTTGCTTCTACGGCTTCCAGAT 7856 Query 1456008 CGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGA 1456067 | || || ||||||||||| || || || || | || || ||||||||| ||||||| Sbjct 7857 CATGATGGAGAACATCCACTCCGAGACGTATTCTTTGCTCATTGACACCTACATCAAGGA 7916 Query 1456068 CCCGGTCGAGAAGGAC-CACCTCTTTCGCGCCATCGACAC 1456106 || | | || | || |||||| | |||||| ||||| Sbjct 7917 GCCCGCCCAG-CGCACGCACCTCCTCAACGCCATTGACAC 7955 Score = 127 bits (140), Expect = 3e-23 Identities = 183/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||||||||| ||||||||| || || | | |||| | || || || Sbjct 8292 ATCATCACTGAGGCCGTCATGATCGAGAAGGAATTCCTGACCGAGGCCCTTCCATGCGCC 8351 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || ||||||||||| ||| | |||||| ||||||||||| || ||||||||||||| Sbjct 8352 CTGCTCGGCATGAACTCCAAC-CTCATGAAGCAGTACATTGAGTTC-GTCGCCGACCGCC 8409 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| || ||||| ||| | || | ||||| ||| | ||| Sbjct 8410 TCCTGGTCGCTCTGGGCAACG-AGAAGGTGTACAAGTCGTCGAACCCCTTCGACTTCATG 8468 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| |||||| || || || || ||| Sbjct 8469 GAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTACCAG 8528 Query 1456762 AAGGCCGGCGTCA 1456774 ||||||||||||| Sbjct 8529 AAGGCCGGCGTCA 8541 Score = 120 bits (132), Expect = 4e-21 Identities = 144/190 (76%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCC--TCGACACTTTGCCGA 1456180 || |||||||||||||| ||||||||||| | ||| || || || || |||| | Sbjct 8031 AAGAAGGCCGACTGGGCTCTGAAGTGGATCCA---GGACCGCGAGTCCAC-CTATGCCCA 8086 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| || |||| ||| || || |||||||||||||| ||| ||| ||| | |||| Sbjct 8087 GCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCGGCGCCTTCGCCTCCAT 8146 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299 ||| |||||||||||||| ||||||||||| |||| || |||| |||||| ||||| Sbjct 8147 CTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTC-TCACCTTTTCCAACGAGCTTATCT 8205 Query 1456300 GTCGCGACGA 1456309 ||| || || Sbjct 8206 CTCGTGATGA 8215 >seq1354 Length=6196 Score = 95.1 bits (104), Expect = 2e-13 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 165768 GGCGCCGTCGGTGCGCGCACCACCGAGAGCCAGGTGCACCGCGAGATGGCGTCGGCGCTG 165827 ||||||||||| || |||||||||||| |||| ||||| | ||| | || |||| ||| Sbjct 3326 GGCGCCGTCGGCGCCCGCACCACCGAGTCCCAGCTGCACAGGGAGCTTGCCTCGGGCCTG 3267 Query 165828 CCGCTGCCCATTGGCTTCAAAAACAGCACCGACGGCAGCGT-GGCGACGGCCCTCGATGC 165886 | | ||| | |||||||| ||| |||||||||||| | | |||| | ||| |||| || Sbjct 3266 TCCTTCCCCGTGGGCTTCAAGAACGGCACCGACGGCAACCTGGGCGTC-GCCATCGACGC 3208 Query 165887 CGTGCGCACTGCCGCC 165902 | | || | |||||| Sbjct 3207 CATCGGCGCCGCCGCC 3192 >seq1743 Length=22384 Score = 89.7 bits (98), Expect = 7e-12 Identities = 123/168 (73%), Gaps = 12/168 (7%) Strand=Plus/Minus Query 724920 GTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTCGATC 724979 || ||||||||||| |||||| || | | ||| |||||| ||||||| ||| Sbjct 12766 GTCCTCAAGCAGGTCCACCCCGACACTGGT-----ATC-TCCAACCGTGCCATGTCCATC 12713 Query 724980 ATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC---GCCTG 725036 |||||||||||||||||||||| |||| ||| ||| |||||||||| || || || Sbjct 12712 CTGAACTCGTTTGTCAACGACATCTTCGAGCGCGTCGCCACCGAGGCC--TCCAAGCTTG 12655 Query 725037 GCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || ||||||| ||| ||| | | || |||||||||||| Sbjct 12654 CTGC-CTACAACAAGAAGTCCACCATCTCCTCCCGGGAGATCCAGACC 12608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177630738611102