Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1209 228 1e-54 seq1718 82.4 1e-10 >seq1209 Length=374226 Score = 228 bits (252), Expect = 1e-54 Identities = 1137/1778 (64%), Gaps = 47/1778 (3%) Strand=Plus/Minus Query 110331 TGAACTGAATTGGTCGGGCTTTCGCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTC 110390 ||||||| || ||| |||| |||| | ||||| |||||||| || |||||||| | Sbjct 94537 TGAACTGGATGGGTGCGGCTGCTGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGAC 94478 Query 110391 CTTGTTTCCATGCGTACATATGCATAGAAGAGAGCTTGGACATCGTTGGACTTTC-CATG 110449 | | ||||| | | ||||| | || |||| ||| | ||| || || |||| Sbjct 94477 CGAGCTTCCAGCCAGCGAAGTGCATGCTGGTGATCTTGCCCATGGATGG-CTCTCGCATG 94419 Query 110450 AAGAGGTTCAT--ACTTTGACTTTGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAA 110507 || ||| | ||| |||| |||| |||||| || || | || ||||| | | Sbjct 94418 TGGATGTTAAGTGACTGAGACT--GGTCGATGAAGGCGCCACGGTCAGCAGCCATCTGCA 94361 Query 110508 TGACATCCTTCATCTTA---ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTG 110564 || || ||| | |||||||| || || || || |||||||||| | | Sbjct 94360 ---CAATTGTCCTCTGAGAGATTTCCCAGACGGTCTTGTACAGCGCCTTGATATCAGCCG 94304 Query 110565 GGATATCTGAGA-TATTCTGGATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCC 110623 |||| ||| || ||||||| | |||||| || | | || | | |||||| || Sbjct 94303 GGATG-CTGGGAATATTCTGCACGGAACCGTCCTCGGCGATGATACGGTTCTTCATGGCC 94245 Query 110624 TTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAAC 110683 | ||||| | |||| || | ||||| ||| || |||||| | ||| Sbjct 94244 TCAGACCACAAGCCAAGCTCTGTCAGGTCCCTGAGAAGCCAAGGGTTGACGACCTGGAAC 94185 Query 110684 TCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTA 110743 || || ||||| | || | |||||||||| | || ||||| || ||||| || || Sbjct 94184 TCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTG 94125 Query 110744 TTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGA 110803 || |||| ||| || | |||||| || || ||||| ||||||||||| | ||||| ||| Sbjct 94124 TTGCCCAGGATCTGCGAGGTGGATGCAGTAGGCATGGGTGCCATCAACAAGCTGTTGCGA 94065 Query 110804 AGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTT 110861 | ||| |||||||||| ||||||| | |||||||| | | | || || || Sbjct 94064 ATACCAGTCTCCTTGATCTTGGCCTTGAGGGCGTCCCAGTCCCACAGGTCAGAA-GGCTT 94006 Query 110862 CACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTT 110921 || |||| ||||||| ||||| || | || || ||| |||| ||||| | || | Sbjct 94005 GACGTTCC-ACATGTCGAACTGGAGGATGCCCTGCGACACGGGGCTGCCCTCGTATGTCT 93947 Query 110922 CATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGG 110981 || | |||| | | || | || | | || || | || || || |||| Sbjct 93946 TGTATGTGCCTTCCACCTTGGCAATGTCGCTGGATGCTGTGAGAGCAGCATGGTAGATGG 93887 Query 110982 TTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG-CGTA-GCGGCA 111039 | || ||||| | |||| ||| || || ||||| || | | || | | Sbjct 93886 TCTCGAAGATTTGCTTGTTCAGCTCACGCGCCTCGGGGGAATCGAAGGGCATACGAAGAG 93827 Query 111040 CAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATT 111099 | || ||| |||| || ||||| ||||| || | ||||||||||| ||||||||| || Sbjct 93826 CCAAG--AATGCATCGGCAAGACCCTGAACGCCGACACCAATAGGTCGGTGTCGCATGTT 93769 Query 111100 AGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || || || || || || || | ||| | || Sbjct 93768 GCTGTTGTATGCCTCCTTCACCGGGTAGTGGTTGACATCGATAATCTTGTTCAAGTTGCG 93709 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 | |||| || |||| || || || | | | | | | | || | || Sbjct 93708 GACGACAACCTGAGTGACCTCGTGCAGCTGCTGGAAGTTGTAGCAGTTGTTGTCATAATC 93649 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| || || || || || || |||| ||||| ||||| ||||||| | | Sbjct 93648 GACGTATGCCGGCAGAGCAATGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGGGCCGA 93589 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | || || || || | ||| || || || || |||| ||||| ||||| Sbjct 93588 GTACTCGATGATCTCGGTGCAGAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTT 93529 Query 111340 ACTCTTCTTGTT-GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 111398 |||||| ||| || | ||| ||||| ||||| |||| | || ||||| ||||| | Sbjct 93528 GCTCTTCCGGTTTGCGTG-ATCTTTGTACAGCATAAAGGGGTTACCAGTCTCGGTCTGAG 93470 Query 111399 ATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTT-GGCC-CGTCCCT 111455 | || || || | ||| | | || | | || || || | | |||| || |||| Sbjct 93469 CCTCAAGGATGGCATACCACAGCTTCTGGGCCTT---CAGTGTCTTACGGCCGCGGCCCT 93413 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 || ||||||||| ||||||||| |||||||||||||| ||||| ||| || | Sbjct 93412 CCTGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCCG 93353 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | || || || || | ||| | ||| | ||| | ||| |||||||||||||| | Sbjct 93352 GGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAACA 93293 Query 111576 GGTCTGGAATCCACAG-GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 111634 | || || ||||| || | | | ||| || || | | || ||| || | ||| ||| Sbjct 93292 GATCAGGGATCCAGAGAGCAAGGAAA-AGGTCACGAGCTCGGATCTCCTCCTTACCGTGG 93234 Query 111635 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCG 111694 || || | || |||||||| | || ||| |||||||| ||||| || || | ||| Sbjct 93233 TTCTTCCGCAGGTCGAGGAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCG 93174 Query 111695 ATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAAT 111748 | | || ||||| ||| | || | ||||| || || ||| ||| || Sbjct 93173 AAGGCACC---GGGACGCTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAG 93117 Query 111749 ACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATT 111806 || || ||||| ||| | || || | || ||| || || || ||| |||||| Sbjct 93116 ACTCGCAGCATGGGAGTGATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAG--C 93059 Query 111807 TATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCG 111866 |||| | | | |||| || || || || || || ||| ||| ||||| | Sbjct 93058 CGGTGGCACGGATACGGTGGACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGG 92999 Query 111867 CACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGA 111926 |||| | | || || ||||||| || | ||| ||||||||| || ||| |||| Sbjct 92998 CACATGTCTTGAGTGTGTCATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGA 92939 Query 111927 AGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAA 111986 ||||| |||| ||| || || || ||||||||||| || || || | || || Sbjct 92938 AGCAAGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGG 92879 Query 111987 TGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCG 112045 |||| | || | | ||||| || ||| ||||| | ||| || | || || || Sbjct 92878 TGAAGA-ACTTGTTTGACATGAGGTTGTAGGTCTCGATGACCCTCTCCACATCATCGCCC 92820 Query 112046 TGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||||| | ||| || ||||||| ||||| |||||| Sbjct 92819 CAGATGCCAACTGCAACACGCATGATCATGTGCTGTGG 92782 >seq1718 Length=289554 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/173 (71%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 11752 GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACC 11811 || ||| ||||| | ||||||||||| ||| || || |||||||| ||||| ||||| Sbjct 243237 GAAGAAAGGGACGCCAGCTTCACCCGCGACGGCCCGTGCCAGGAGGGTTTTTCCGGTACC 243296 Query 11812 TGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACTTCCAAAATATCTC 11869 ||| ||| | |||||| | ||| || | |||| |||| | || | | | | Sbjct 243297 AGGCGGACCAACCAGAAGGACTCCTTTTGGCAGCTTGCCACCCAAGGTCGAGA--ACTTG 243354 Query 11870 TCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTC 11922 ||||| | |||||| || || |||||||| | || || || |||||| |||| Sbjct 243355 TCGGGGTTCTTGAGGAACTCGACAATCTCCTGGAGCTCCTCCTTGGCCTCGTC 243407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628017311901600