Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20]
1,871 sequences; 55,029,878 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq1209 244 1e-59
seq561 120 4e-22
>seq1209
Length=374226
Score = 244 bits (270), Expect = 1e-59
Identities = 1145/1790 (64%), Gaps = 71/1790 (4%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|||||| ||||| ||||||| || || | || || || || || | || |||
Sbjct 92782 CCACAGCACATGATCATGCGTGTTGCAGTTGGCATCTGGGGCGATGATGTGGAGAGGGTC 92841
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| ||||| ||| || ||||| | | || | |||| || || | || || || ||
Sbjct 92842 ATCGAGACCTACAACCTCATGTCAAACAAGT-TCTTCACCCATGCCTCGCCCACACTATT 92900
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
||||||||| || || ||||| |||| ||||||||| ||| || ||||||||
Sbjct 92901 CAATGCTGGCACTCCCCAGCCCCAGCTGTCATCTTGCTTCCTCGTCGACATGAAGGAGGA 92960
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
| ||| | || ||||||| || || | | ||||| ||||| ||| ||| ||
Sbjct 92961 CAGCATCGAGGGCATCTATGACACACTCAAGACATGTGCCATGATCTCCAAGATGGCCGG 93020
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518
|| || || || || |||| | | | |||| |||||| ||| || ||
Sbjct 93021 AGGCATCGGCCTGAACGTCCACCGTATCCGTGCCACCGG--CTCGTACATCGCTGGCACC 93078
Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578
|| ||| || | || || | ||| ||||| || || || ||| ||| || || |||
Sbjct 93079 AACGGTACCTCCAACGGCATCACTCCCATGCTGCGAGTCTTCAACAACACTGCCCGTTAT 93138
Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632
|| | || | ||| ||||| || | |||| | || || ||||| |||
Sbjct 93139 GTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTCGCTATTTACCTCGAGCCGTGG 93195
Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692
||||| ||| || | |||||||| || |||| ||||| ||| | |||||| ||
Sbjct 93196 CACGCTGATGTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGTAAGGAGGAGATCCGA 93255
Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752
|| || || ||| ||||||||||| || ||||| ||||||||| | || ||| ||
Sbjct 93256 GCTCGTGACCTTTTCCTTGCTCTCTGGATCCCTGATCTGTTCATGAAGCGGGTCGAGAAG 93315
Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812
| || | ||| | || | || || || || || || ||| |||| | |||
Sbjct 93316 AACGGTGACTGGACCCTTATGTGCCCCAACGAGTGCCCGGGCCTCGCCGACTGCTACGGT 93375
Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGC-----GACTGCG 104866
||||||||||| ||||| ||| ||||||||| | || || || ||| ||| |
Sbjct 93376 GAGGAGTTTGAGGCCCTCTACGAGAAGTACGAGCAGGAGGGCCGCGGCCGTAAGACACTG 93435
Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926
| || |||| || ||||| | || || || || |||| |||||||||||||
Sbjct 93436 AAGG-CCCAGAAGC-----TGTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGTAAC 93489
Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986
|| | ||||| |||||||| | |||| ||||| || || ||||| ||||
Sbjct 93490 CCCTTTATGCTGTACAAAGATCACGCAAACCGGAAGAGCAACCAGAAGAACCTGGGCACC 93549
Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046
||| || || || ||||| || || ||| | || | | | | |||||| |||
Sbjct 93550 ATCCGCAGCTCTAACCTCTGCACCGAGATCATCGAGTACTCGGCCCCGGATGAGGTCGCT 93609
Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 105106
|| || ||||| || || || ||||| || || || ||| || | || |
Sbjct 93610 GTCTGCAACCTGGCTTCCATTGCTCTGCCGGCATACGTCGATTATGACAACAACTGCTAC 93669
Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166
| | | | || ||||| || || | |||| | ||| | |||| ||||
Sbjct 93670 AACTTCCAGCAGCTGCACGAGGTCACTCAGGTTGTCGTCCGCAACTTGAACAAGATTATC 93729
Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226
||| || ||||| || || || || || ||| ||||||| || |||
Sbjct 93730 GATGTCAACCACTACCCGGTGAAGGAGGCATACAACAGCAACATGCGACACCGACCTATT 93789
Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGAT 105283
||| |||| ||||||||||| || |||| |||| | |||| || | | || |||
Sbjct 93790 GGTGTCGGCGTTCAGGGTCTTGCCGATGCATTCTTGGCTCTTCGTATGC---CCTTCGAT 93846
Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343
||| ||| ||| || | || || || || |||||||| || || || |||||
Sbjct 93847 TCCCCCGAGGCGCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCATGCTGCTCTC 93906
Query 105344 GAGGCGAGTTCAGAG---TTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400
|| | ||| | ||| || |||| || || |||| | || | |||||
Sbjct 93907 ACAGC--ATCCAGCGACATTGCCA-AGGTGGAAGGCACATACAAGACATACGAGGGCAGC 93963
Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC--AC 105457
|| | || || || | || || || || |||| |||| || |||| |||| ||
Sbjct 93964 CCCGTGTCGCAGGGCATCCTCCAGTTCGACATGT-GGAACGT-----CAAGCCTTCTGAC 94017
Query 105458 ---TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTC 105514
| |||||||| || ||||||| |||||||||| ||| |||| ||||| |
Sbjct 94018 CTGTGGGACTGGGACGCCCTCAAGGCCAAGATCAAGGAGACTGGTATTCGCAACAGCTTG 94077
Query 105515 CTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 105574
| ||||| || ||||| || || |||||| | || ||| |||| || || || |||||
Sbjct 94078 TTGATGGCACCCATGCCTACTGCATCCACCTCGCAGATCCTGGGCAACAACGAGTGCTTC 94137
Query 105575 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634
|| || || || | |||||||| | | || | ||||| || ||||| | | |||
Sbjct 94138 GAGCCATATACCTCCAACATCTACCAGCGACGTGTGCTCGCTGGCGAGTTCCAGGTCGTC 94197
Query 105635 AAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691
||| || |||| | ||||| | |||| |||| | ||||| ||| ||||||
Sbjct 94198 AACCCTTGGCTTCTCAGG---GACCTGACAGAGCTTGGCTTGTGGTCTGAGGCCATGAAG 94254
Query 105692 GATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATT 105751
| | || | | || |||||| | || |||||| || || ||| ||
Sbjct 94255 AACCGTATCATCGCCGAGGACGGTTCCGTGCAGAATATTCCCAGCATCCCGGCTGATATC 94314
Query 105752 AAGAAGTTGTACCGCACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGGCC 105808
||| | ||||| || || ||||||||| ||| || || | | |||||
Sbjct 94315 AAGGCGCTGTACAAGACCGTCTGGGAAATCTCTCAGAGGACAATTG---TGCAGATGGCT 94371
Query 105809 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATG-GAAAGT 105865
|| || ||||| |||||| || | |||| ||| | || || |||| || ||
Sbjct 94372 GCTGACCGTGGCGCCTTCATCGACC--AGTCTCAGTCACTTAACATCCACATGCGAGAG- 94428
Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925
||| | ||| |||| || | |||||| | | |||||| |||||||| ||
Sbjct 94429 CCATCCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACT 94488
Query 105926 GGGATGTATTACCTCCGATCTAAGGCA-AAGGCGCGCCCAATTCAGTTCA 105974
|| ||||| |||||||| | ||||| || ||| ||| || |||||||
Sbjct 94489 GGCATGTACTACCTCCGCACCCAGGCAGCAGCCGCACCC-ATCCAGTTCA 94537
>seq561
Length=46336
Score = 120 bits (132), Expect = 4e-22
Identities = 156/215 (73%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 94793
|||||| || || | ||||| || || |||||| |||||||| || || ||||
Sbjct 8015 AGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGG----ATCCAGGACCGCG 8070
Query 94794 TT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849
||| ||| |||| || |||| || || || ||||| ||||||||| |
Sbjct 8071 AGTCCACCTATGCCCAGCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCG 8130
Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909
| ||||| | | || | |||||||||||||| || |||||||| |||||| ||| |
Sbjct 8131 GCGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTT 8190
Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944
|||||||||||||||||||||| ||||| || |||
Sbjct 8191 CCAACGAGCTTATCTCTCGTGATGAGGGCCTGCAC 8225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583247158988040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |