Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1209 244 1e-59 seq561 120 4e-22 >seq1209 Length=374226 Score = 244 bits (270), Expect = 1e-59 Identities = 1145/1790 (64%), Gaps = 71/1790 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| ||||| ||||||| || || | || || || || || | || ||| Sbjct 92782 CCACAGCACATGATCATGCGTGTTGCAGTTGGCATCTGGGGCGATGATGTGGAGAGGGTC 92841 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || ||||| | | || | |||| || || | || || || || Sbjct 92842 ATCGAGACCTACAACCTCATGTCAAACAAGT-TCTTCACCCATGCCTCGCCCACACTATT 92900 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || || ||||| |||| ||||||||| ||| || |||||||| Sbjct 92901 CAATGCTGGCACTCCCCAGCCCCAGCTGTCATCTTGCTTCCTCGTCGACATGAAGGAGGA 92960 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | || ||||||| || || | | ||||| ||||| ||| ||| || Sbjct 92961 CAGCATCGAGGGCATCTATGACACACTCAAGACATGTGCCATGATCTCCAAGATGGCCGG 93020 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 || || || || || |||| | | | |||| |||||| ||| || || Sbjct 93021 AGGCATCGGCCTGAACGTCCACCGTATCCGTGCCACCGG--CTCGTACATCGCTGGCACC 93078 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || ||| || | || || | ||| ||||| || || || ||| ||| || || ||| Sbjct 93079 AACGGTACCTCCAACGGCATCACTCCCATGCTGCGAGTCTTCAACAACACTGCCCGTTAT 93138 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | || | ||| ||||| || | |||| | || || ||||| ||| Sbjct 93139 GTCGACCAGGGTGGCAACAAGCGTCCC---GGTGCCTTCGCTATTTACCTCGAGCCGTGG 93195 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||||| ||| || | |||||||| || |||| ||||| ||| | |||||| || Sbjct 93196 CACGCTGATGTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGTAAGGAGGAGATCCGA 93255 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || || ||| ||||||||||| || ||||| ||||||||| | || ||| || Sbjct 93256 GCTCGTGACCTTTTCCTTGCTCTCTGGATCCCTGATCTGTTCATGAAGCGGGTCGAGAAG 93315 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 | || | ||| | || | || || || || || || ||| |||| | ||| Sbjct 93316 AACGGTGACTGGACCCTTATGTGCCCCAACGAGTGCCCGGGCCTCGCCGACTGCTACGGT 93375 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCG-GGC-----GACTGCG 104866 ||||||||||| ||||| ||| ||||||||| | || || || ||| ||| | Sbjct 93376 GAGGAGTTTGAGGCCCTCTACGAGAAGTACGAGCAGGAGGGCCGCGGCCGTAAGACACTG 93435 Query 104867 ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | || |||| || ||||| | || || || || |||| ||||||||||||| Sbjct 93436 AAGG-CCCAGAAGC-----TGTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGTAAC 93489 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | ||||| |||||||| | |||| ||||| || || ||||| |||| Sbjct 93490 CCCTTTATGCTGTACAAAGATCACGCAAACCGGAAGAGCAACCAGAAGAACCTGGGCACC 93549 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 ||| || || || ||||| || || ||| | || | | | | |||||| ||| Sbjct 93550 ATCCGCAGCTCTAACCTCTGCACCGAGATCATCGAGTACTCGGCCCCGGATGAGGTCGCT 93609 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT 105106 || || ||||| || || || ||||| || || || ||| || | || | Sbjct 93610 GTCTGCAACCTGGCTTCCATTGCTCTGCCGGCATACGTCGATTATGACAACAACTGCTAC 93669 Query 105107 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATT 105166 | | | | || ||||| || || | |||| | ||| | |||| |||| Sbjct 93670 AACTTCCAGCAGCTGCACGAGGTCACTCAGGTTGTCGTCCGCAACTTGAACAAGATTATC 93729 Query 105167 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 105226 ||| || ||||| || || || || || ||| ||||||| || ||| Sbjct 93730 GATGTCAACCACTACCCGGTGAAGGAGGCATACAACAGCAACATGCGACACCGACCTATT 93789 Query 105227 GGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT---TCTTTGTCGCCACGCATTTGAT 105283 ||| |||| ||||||||||| || |||| |||| | |||| || | | || ||| Sbjct 93790 GGTGTCGGCGTTCAGGGTCTTGCCGATGCATTCTTGGCTCTTCGTATGC---CCTTCGAT 93846 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTT 105343 ||| ||| ||| || | || || || || |||||||| || || || ||||| Sbjct 93847 TCCCCCGAGGCGCGTGAGCTGAACAAGCAAATCTTCGAGACCATCTACCATGCTGCTCTC 93906 Query 105344 GAGGCGAGTTCAGAG---TTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400 || | ||| | ||| || |||| || || |||| | || | ||||| Sbjct 93907 ACAGC--ATCCAGCGACATTGCCA-AGGTGGAAGGCACATACAAGACATACGAGGGCAGC 93963 Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG-CTTC--AC 105457 || | || || || | || || || || |||| |||| || |||| |||| || Sbjct 93964 CCCGTGTCGCAGGGCATCCTCCAGTTCGACATGT-GGAACGT-----CAAGCCTTCTGAC 94017 Query 105458 ---TACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTC 105514 | |||||||| || ||||||| |||||||||| ||| |||| ||||| | Sbjct 94018 CTGTGGGACTGGGACGCCCTCAAGGCCAAGATCAAGGAGACTGGTATTCGCAACAGCTTG 94077 Query 105515 CTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 105574 | ||||| || ||||| || || |||||| | || ||| |||| || || || ||||| Sbjct 94078 TTGATGGCACCCATGCCTACTGCATCCACCTCGCAGATCCTGGGCAACAACGAGTGCTTC 94137 Query 105575 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 105634 || || || || | |||||||| | | || | ||||| || ||||| | | ||| Sbjct 94138 GAGCCATATACCTCCAACATCTACCAGCGACGTGTGCTCGCTGGCGAGTTCCAGGTCGTC 94197 Query 105635 AAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 ||| || |||| | ||||| | |||| |||| | ||||| ||| |||||| Sbjct 94198 AACCCTTGGCTTCTCAGG---GACCTGACAGAGCTTGGCTTGTGGTCTGAGGCCATGAAG 94254 Query 105692 GATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATT 105751 | | || | | || |||||| | || |||||| || || ||| || Sbjct 94255 AACCGTATCATCGCCGAGGACGGTTCCGTGCAGAATATTCCCAGCATCCCGGCTGATATC 94314 Query 105752 AAGAAGTTGTACCGCACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGGCC 105808 ||| | ||||| || || ||||||||| ||| || || | | ||||| Sbjct 94315 AAGGCGCTGTACAAGACCGTCTGGGAAATCTCTCAGAGGACAATTG---TGCAGATGGCT 94371 Query 105809 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATG-GAAAGT 105865 || || ||||| |||||| || | |||| ||| | || || |||| || || Sbjct 94372 GCTGACCGTGGCGCCTTCATCGACC--AGTCTCAGTCACTTAACATCCACATGCGAGAG- 94428 Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925 ||| | ||| |||| || | |||||| | | |||||| |||||||| || Sbjct 94429 CCATCCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCTCAAGACT 94488 Query 105926 GGGATGTATTACCTCCGATCTAAGGCA-AAGGCGCGCCCAATTCAGTTCA 105974 || ||||| |||||||| | ||||| || ||| ||| || ||||||| Sbjct 94489 GGCATGTACTACCTCCGCACCCAGGCAGCAGCCGCACCC-ATCCAGTTCA 94537 >seq561 Length=46336 Score = 120 bits (132), Expect = 4e-22 Identities = 156/215 (73%), Gaps = 8/215 (4%) Strand=Plus/Plus Query 94734 AGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCG 94793 |||||| || || | ||||| || || |||||| |||||||| || || |||| Sbjct 8015 AGTTCCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGG----ATCCAGGACCGCG 8070 Query 94794 TT----CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 94849 ||| ||| |||| || |||| || || || ||||| ||||||||| | Sbjct 8071 AGTCCACCTATGCCCAGCGCCTGGTCGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGCG 8130 Query 94850 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 | ||||| | | || | |||||||||||||| || |||||||| |||||| ||| | Sbjct 8131 GCGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGTCTCACCTTTT 8190 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||||||||||||||||| ||||| || ||| Sbjct 8191 CCAACGAGCTTATCTCTCGTGATGAGGGCCTGCAC 8225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583247158988040