Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq576 154 4e-32 seq1489 138 3e-27 >seq576 Length=224932 Score = 154 bits (170), Expect = 4e-32 Identities = 538/832 (65%), Gaps = 7/832 (1%) Strand=Plus/Minus Query 349268 ATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAG 349327 || ||||| || || || ||| | || || || || | ||| || || ||||| |||||| Sbjct 101428 ATCGCAAACGACCAGGGAAACCGGACCACACCTTCCTTCGTCGCTTTCACCGACACTGAG 101369 Query 349328 CGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTT 349387 ||| |||| || ||| | || || || || | || || || | || || || || Sbjct 101368 CGTCTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCACAACACCGTCTTC 101309 Query 349388 GATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAA 349447 ||||| ||||| | ||||| | | || ||| || | || | || Sbjct 101308 GATGCAAAGCGGTTGATTGGCCGCAAGTTCCAGGACCCTGAGGTTCAGGCCGACATGAAG 101249 Query 349448 CATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATAT 349507 || || || || | | || | | ||| |||| ||| || | || ||||| || | Sbjct 101248 CACTTCCCCTTCAAGATCGT-CGAGAAG--GGTGGTAAGCCCAACATCGAGGTCGAGTTC 101192 Query 349508 AAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAAT 349566 || ||||| || || || || |||||||| || || || ||||| | || || Sbjct 101191 AAGGGTGAGACCAAGACC-TTCACCCCCGAAGAGATCTCCTCCATGGTCCTCACCAAGAT 101133 Query 349567 GAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACC 349626 | || | ||||| || || | |||| || || | | ||||| || || || || Sbjct 101132 GCGTGAGACCGCTGAGGCTTACCTCGGTGGCACCGTCAACAACGCTGTCATCACCGTCCC 101073 Query 349627 AGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTT 349686 ||||| || || || | |||||| || || || || ||||| |||||| || | Sbjct 101072 CGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGACGCTGGTCTCATTGCTGGCCT 101013 Query 349687 AAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 || ||||| | || || || || ||||| ||||| || ||||| || || ||||| || Sbjct 101012 GAACGTTCTGCGTATCATCAACGAGCCCACCGCTGCCGCCATTGCCTACGGTCTTGACAA 100953 Query 349747 AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGT 349806 | | || || || | || || || ||| | || ||||||||||| ||||| Sbjct 100952 GAAGGTCGAGGGCGAGCGCAACGTCCTGATCTTCGATCTGGGCGGTGGTACTTTCGATGT 100893 Query 349807 ATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACA 349866 || || || || | || ||||| || || || || || | ||||| || ||||| || Sbjct 100892 CTCGCTCCTGACCATCGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGAGATACTCA 100833 Query 349867 TCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCG 349926 || ||||| || || ||||| || |||||||| || || || || || || ||||| Sbjct 100832 CCTGGGTGGTGAGGACTTTGACAACCGTCTCGTCAACCACTTCGTAAACGAGTTCAAGCG 100773 Query 349927 TCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGT 349985 ||||| || | || | | || || | || ||||||| || | ||||| | Sbjct 100772 -CAAGCACAAGAAGGACCTCAGCACCAACGCTCGTGCCCTGCGTCGTCTCCGCACTGCTT 100714 Query 349986 GTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTC 350045 | || ||||| ||||| | | || || || | || ||||| || || || || || | Sbjct 100713 GCGAGCGTGCCAAGCGAACTCTGTCTTCCTCTGCACAGACCTCCATCGAGATCGACTCCC 100654 Query 350046 TTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGA 350097 | || || | || |||| | || || || |||||||| || || || Sbjct 100653 TCTACGAGGGTATCGACTTCTACACCTCCATCACCCGTGCTCGTTTCGAGGA 100602 >seq1489 Length=43664 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| ||||| || | | || || || || ||||||||||| || ||||| || || || Sbjct 23122 CATTCCACCGCGGAGGCGGAGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTC 23063 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || |||||||||||||| || || ||||| ||||| Sbjct 23062 GGACAGAGTCCGGCCATCCTCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGG 23003 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | ||||| || || || | |||||| | || Sbjct 23002 GGGGATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTC 22943 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 22942 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22892 Score = 120 bits (132), Expect = 9e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || || || || || || || || || || || || Sbjct 22894 CATACCGCCACGGAGACGAAGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTC 22835 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| || || || ||||| || || ||||||||||| Sbjct 22834 GGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCAGG 22775 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || |||||||| || | ||||| || || || | |||||| | || Sbjct 22774 GGGGATGCCCTCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTC 22715 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| ||||| || || || || || |||||||| Sbjct 22714 GACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515218076037413