Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1209 280 2e-70 seq1253 152 6e-32 seq561 120 3e-22 >seq1209 Length=374226 Score = 280 bits (310), Expect = 2e-70 Identities = 494/713 (69%), Gaps = 10/713 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||| ||| || | ||| | |||| ||| || || ||| |||| || || ||||| Sbjct 92845 GAGACCTACAACCTCATGTCAAACAAGTTCTTCACCCATGCCTCGCCCACACTATTCAAT 92904 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 ||||| || || || ||| |||| |||||||| || | |||||||| ||| Sbjct 92905 GCTGGCACTCCCCAGCCCCAGCTGTCATCTTGCTTCCTCGTCGACATGAAGGAGGACAGC 92964 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| |||||||| || || |||||| |||||| ||||||||| | | || || Sbjct 92965 ATCGAGGGCATCTATGACACACTCAAGACATGTGCCATGATCTCCAAGATGGCCGGAGGC 93024 Query 53423 ATCGGTATCCACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 ||||| | || || | ||| |||||| | |||| | ||| || || |||| Sbjct 93025 ATCGGCCTGAACG--TCCACCGTATCCGTGCCACCGGCTCGTACATCGCTGGCACCAACG 93082 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | || | || ||| || ||||| || |||||||||||||| ||||| || ||| Sbjct 93083 GTACCTCCAACGGCATCACTCCCATGCTGCGAGTCTTCAACAACACTGCCCGTTATGTCG 93142 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 |||||||||| ||||| || | ||||| || |||||||||||||||||||| | Sbjct 93143 ACCAGGGTGGCAACAAGCGTCCCGGTGCCTTCGCTATTTACCTCGAGCCGTGGCACGCTG 93202 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTG 53660 | | | ||||| ||||| ||||| ||| || ||| | || ||||| || |||| Sbjct 93203 ATGTCTTCGAGTTCCTCGACCTGCGGAAGAACCACGGTAAGGAGGAGATCCGAGCTCGTG 93262 Query 53661 ACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGG 53720 |||| || ||||| ||||| || || || |||||| | ||| |||||| ||| | Sbjct 93263 ACCTTTTCCTTGCTCTCTGGATCCCTGATCTGTTCATGAAGCGGGTCGAGAAGAACGGTG 93322 Query 53721 AGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC-CAGGGTGTCTACGGTGAGGAG 53779 | ||| ||| |||||||| ||||||||||| |||||| | | || ||||||||||||| Sbjct 93323 ACTGGACCCTTATGTGCCCCAACGAGTGCCCGGGCCTCGCCGACTG-CTACGGTGAGGAG 93381 Query 53780 TTTAACGAGATGTATCGGACGTAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 ||| | | | || || |||| |||| |||||||| | |||| | |||| Sbjct 93382 TTTGAGGCCCTCTACGAGAAGTACGAGCAG--GAGGGCCGCGGCCGTAAGACACTGAAGG 93439 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | || | ||| |||| ||||| || ||| ||||| || | || | ||| Sbjct 93440 CCCAGAAGCTGTGGTATGCCATCCTTGAGGCTCAGACCGAGACTGGTAACCCCTTTATGC 93499 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATC 53950 ||||| ||| | ||| ||||||||||||||||||| | ||| |||| Sbjct 93500 TGTACAAAGATCACGCAAACCGGAAGAGCAACCAGAAGAACCTGGGCACCATC 93552 Score = 104 bits (114), Expect = 3e-17 Identities = 299/449 (67%), Gaps = 11/449 (2%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||| | || | |||| || ||||| || || || || | |||||| |||||||| Sbjct 94066 CGCAACAGCTTGTTGATGGCACCCATGCCTACTGCATCCACCTCGCAGATCCTGGGCAAC 94125 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| || || |||||||||||| ||| || || || || ||| Sbjct 94126 AACGAGTGCTTCGAGCCATATACCTCCAACATCTACCAGCGACGTGTGCTCGCTGGCGAG 94185 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG-CAGAAGATCAACAAGTGGAACCC 55662 || | ||||| || ||| ||||||| |||| | | | |||| Sbjct 94186 TTCCAGGTCGTCAACCCTTGGCTTCTCAGGGACCTGACAGA-GCTTGGCTTGTGGTCTGA 94244 Query 55663 GCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG--AGATTCC 55719 | || |||| ||| | || || | || ||||| |||||| | || ||| Sbjct 94245 GGCCATGAAGAACCGTATCATCGCCGAG-GACGGTTCCGTGCAGAATATTCCCAGCATCC 94303 Query 55720 T--CTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATT 55777 ||| | |||||| | | ||| ||| || ||||| || | |||| || | | Sbjct 94304 CGGCTGA-TATCAAGGCGCTGTACAAGACCGTCTGGGAAATCTCTCAGAGGACAATTGTG 94362 Query 55778 GACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG 55837 | ||| |||||| ||||| || | |||||||||||| ||||| || |||||| |||| Sbjct 94363 CAGATGGCTGCTGACCGTGGCGCCTTCATCGACCAGTCTCAGTCACTTAACATCCACATG 94422 Query 55838 -GAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 ||| | || || ||| |||| | | | |||||||| || |||||| || || Sbjct 94423 CGAG-AGCCATCCATGGGCAAGATCACCAGCATGCACTTCGCTGGCTGGAAGCTCGGTCT 94481 Query 55897 CAAGACGGGTATGTACTATCTGCGGACCC 55925 |||||| || |||||||| || || |||| Sbjct 94482 CAAGACTGGCATGTACTACCTCCGCACCC 94510 >seq1253 Length=142092 Score = 152 bits (168), Expect = 6e-32 Identities = 206/286 (72%), Gaps = 1/286 (0%) Strand=Plus/Plus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 || || ||||| |||||||||| ||| || | || | ||||| || ||||| | |||| Sbjct 124547 AGCCGCGTGAAGATGTAACGAGCGCTGGCCGAGTCACTACCACCGGCGAGACGGGAACCG 124606 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | || || ||||||| | ||| | |||||| | || |||||||| || || | Sbjct 124607 AAGTTACCGCTGGGCTCCAGAATGTTTATGTTGTTCGATCCAACAAAGTTCTGGGCGAGA 124666 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478 | || || || | | | ||||||||||| || || ||||| || | ||| Sbjct 124667 CCAATGATGGTCTGCTGCAAGGAGACTTCACCATGGTGGTAGGCAGTCTGTTCGGAGACG 124726 Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAA 117538 ||||| |||| || | | |||||| |||| ||||||||| ||||| |||||| || Sbjct 124727 TAGCCAGCCAACTCAACAACCTTCTTGTCCTTCGTCAGGTTGCGCTTGAAGCAGGCGTAG 124786 Query 117539 ATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGA 117584 || ||||||||||||| ||||||||| || ||| | ||| |||||| Sbjct 124787 ATGACCTTGCGCTGACCTGGCTTCAGGCCGTCCACAACG-GAGGGA 124831 Score = 141 bits (156), Expect = 1e-28 Identities = 206/291 (71%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 |||||||||||||| || | |||||||| || | ||||| || || || | || || Sbjct 124550 CGCGTGAAGATGTAACGAGCGCTGGCCGAGTCACTACCACCGGCGAGACGGGAACCGAAG 124609 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | || |||||| || | ||| | |||||| | || || || ||||| || | | Sbjct 124610 TTACCGCTGGGCTCCAGAATGTTTATGTTGTTCGATCCAACAAAGTTCTGGGCGAGACCA 124669 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 | || || ||||| ||||||| ||||| || || ||||| || | || ||| Sbjct 124670 ATGATGGTCTGCTGCAAGGAGACTTCACCATGGTGGTAGGCAGTCTGTTCGGAGACGTAG 124729 Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265 || ||||||| | |||||| ||||| |||||||||| ||||| |||||||| || Sbjct 124730 CCAGCCAACTCAACAACCTTCTTGTCCTTCGTCAGGTTGCGCTTGAAGCAGGCGTAGATG 124789 Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGC 152316 ||||||||||| ||| |||| |||||||| ||| ||||| || ||| Sbjct 124790 ACCTTGCGCTGACCTGGCTTCAGGCCGTCCACAACGGAGGGAATGGACCGC 124840 Score = 93.3 bits (102), Expect = 5e-14 Identities = 206/303 (68%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 152769 GTTGAGGACCAAGCCCTTGATGTGCGATCCGTCAAGATCCGCGTCGGTCATGATCATCAG 152828 ||||| || ||||||||||||||| ||||| ||||| |||| |||||||||||| Sbjct 125299 GTTGATGAGCAAGCCCTTGATGTGACTGCCGTCGTGATCCTGATCGGCCATGATCATCAG 125358 Query 152829 ACGACCGTAGCGCAGGTCACGTAGTGACCCGTAGACCTTTCCATGT--TGAAGCCCGAGG 152886 | | || ||||| ||| | | | ||| | || | || || ||| | ||||| ||| Sbjct 125359 ATGGCCATAGCGGAGG-CTCTTGGTG-TCTGTGTAGGTTGCCTTGTGCTTGAGCCCAAGG 125416 Query 152887 ATCTTTTTGAGGTTGGAAAATTCCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGA 152946 | || ||||| |||| | ||| | || | | | ||| | | || |||||| ||| Sbjct 125417 AACTGTTTGATGTTGTTGATCTCCGCGTTCTTCATGATCTGGTCTATCGAGGCATCACGA 125476 Query 152947 ACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGGCCTACAA-CGCT 153005 || || || |||||||| || || ||||| |||| || | | | | || ||| Sbjct 125477 ACGTTCAGCATCTTTCCCCTCAGAGGGAACACACCGATGCGGTCGGGATCAAGAATCGCA 125536 Query 153006 CAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTC 153065 | | || || | || || ||| |||||||||||||| || | || || || || || Sbjct 125537 C-GGCCCGCCACGGCCAGAGCTCGAGCCGAGTCACCCTCAGTCAAGATCAGTGTGCACTC 125595 Query 153066 GTG 153068 ||| Sbjct 125596 GTG 125598 >seq561 Length=46336 Score = 120 bits (132), Expect = 3e-22 Identities = 304/452 (67%), Gaps = 18/452 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||||||||| || | | |||||||||||||| Sbjct 8524 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 8465 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAG 74578 ||||||| |||||| | ||| | |||||| |||| | | ||| ||| Sbjct 8464 AAGTCGAAGGGGTTCGACGACTTGTACAC---CTTCTCGTTGCCCAGAGCGA-CCAGGAG 8409 Query 74579 GCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTT 74638 ||| || || || || | |||||||||| |||| | | |||||||| || Sbjct 8408 GCGGTCGGCGACGAACTCAATGTACTGCTTCATGAGGTTGGAGTTCATGCCGAGCAGGGC 8349 Query 74639 GCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATCT 74697 ||| || || |||||||| | || || |||| | | | ||| || || | || | Sbjct 8348 GCATGGAAGGGCCTCGGTCAGGAATTCCTTCTCGATCATGACGGCCTCAGTG-ATGATGT 8290 Query 74698 TGTGAATGT-CT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCA 74753 || | | || ||| |||| || ||| ||||| ||| | ||| | || ||| Sbjct 8289 CCTGGACGCGCTGCTTGCTTGGGCGGTT---CCTGAGGTGCGAGAACAGCAGGCA-GGCG 8234 Query 74754 AACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGC 74813 || || ||| ||| ||||| | || | || || ||||| | || |||||| Sbjct 8233 AAGTCGGTGTGCAGGCCCTCATCACGAGAGATAAGCTCGTTGGAAAAGGTGAGACCAGGC 8174 Query 74814 ATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCT 74873 || || ||||||||||| | ||| ||||||| ||||| || |||||||||||||| Sbjct 8173 ATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCGCCGCTGAAGAAGATGCCC 8114 Query 74874 TCGACACACGCAAAGGCGACAAGGCGTTGCGC 74905 ||||| || |||||||| ||||| || || Sbjct 8113 TCGACGGCAGCGAAGGCGACCAGGCGCTGGGC 8082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547203201985800