Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1209 259 5e-64 seq1489 168 8e-37 seq427 163 3e-35 seq1253 149 7e-31 seq28 116 4e-21 >seq1209 Length=374226 Score = 259 bits (286), Expect = 5e-64 Identities = 1135/1766 (64%), Gaps = 65/1766 (4%) Strand=Plus/Minus Query 80031 TGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTG 80090 |||| | || || || ||||||||||| |||||||| || ||||||||| | ||| Sbjct 94515 TGCCTGGGTGCGGAGGTAGTACATGCCAGTCTTGAGACCGAGCTTCCAGCCAGCGAAGTG 94456 Query 80091 CATAGAACTGAGCTTCGCAAGTGTGGGGTTCTC-CATGAAGATGTTCAGAGACTGAGACT 80149 ||| ||| ||| | | || || |||| |||| |||||| || |||||||||| Sbjct 94455 CATGCTGGTGATCTTGCCCA-TGGATGGCTCTCGCATGTGGATGTTAAGTGACTGAGACT 94397 Query 80150 GACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCC 80209 | |||||| || ||||| || || ||||| | | ||||| | | || | ||||||| Sbjct 94396 GGTCGATGAAGGCGCCACGGTCAGCAGCCATCTGCACAATTGTCCTCTGAGAGATTTCCC 94337 Query 80210 ATACTGTACGATACA---CCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACAC 80263 | || || |||| |||| | || | || ||| || || ||||| Sbjct 94336 AGACGGTCTTGTACAGCGCCTTGATA---TCAGCCGGGATGCTGGGAATATTCTGCAC-- 94282 Query 80264 TGCCACCGTCCTTTACAATTTGA---TTTTTCAAT---TCAGACGTCCAGACACCAAGCT 80317 | |||||||| | || | || |||| |||||| | || ||||||| Sbjct 94281 -GGAACCGTCCTCGGCGATGATACGGTTCTTCATGGCCTCAGACCACAAG---CCAAGCT 94226 Query 80318 -TGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGA 80376 ||| ||| || | | ||| ||| | | ||||| || ||||| || Sbjct 94225 CTGT-CAGGTCCCTGAGAAGCCAAGGGTTGACGACCTGGAACTCGCCAGCGAGCACACGT 94167 Query 80377 CGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCC 80436 ||| | || | ||| | || || ||||| || ||||||||| || |||||||| | Sbjct 94166 CGCTGGTAGATGTTGGAGGTATATGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAG 94107 Query 80437 GTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATA 80496 ||| || || ||||| || | | ||||| || || | || || |||||| Sbjct 94106 GTGGATGCAGTAGGCATGGGTGCCATCAACAAGCTGTTGCGAATACCAGTCTCCTTGATC 94047 Query 80497 T---CCTCGCGCAAATCTGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGT 80548 | ||| | | || | ||| | ||| || ||| |||| |||||||| Sbjct 94046 TTGGCCTTGAGGGCGTCCCAGTCCCACAGGTCAG----AAGGCT-TGACGTTCCACATGT 93992 Query 80549 CGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCG 80608 || ||| | |||||||| |||| | || ||| || | |||| ||| | ||| ||| Sbjct 93991 CGAACTGGAGGATGCCCTGCGACACGGGGCTGCCCTCGTATGTCTTGTATGTGCCTTCCA 93932 Query 80609 TCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCT 80668 |||||| | || | || | | || || || || || ||| ||| |||| || Sbjct 93931 CCTTGGCAATGTCGCTGGATGCTGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGCT 93872 Query 80669 TGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAG 80728 |||||| | ||||||| ||| ||||| | || | | || ||| | || | Sbjct 93871 TGTTCAGCTCACGCGCCTCGGGGGAATCGAAGGGCATACGAAGAGCCAAGAATGCATCGG 93812 Query 80729 CCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTT-CGATCGCTCGGCCTCC 80787 | || ||||||||||||| | || || ||||| ||| |||| | | | | |||||| Sbjct 93811 CAAGACCCTGAACGCCGACACCAATAGGTCGGTGTCGCATGTTGCTGTTG-TATGCCTCC 93753 Query 80788 GGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTA 80847 | ||||| ||| |||||| | ||||| |||||| |||||| | || Sbjct 93752 TTCACCGGGTAGTGGTTGACATCGATAATCTTGTTCAAGTTGCGGACGACAACCTGAGTG 93693 Query 80848 ACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCCCCT--TC-ACAAATGCCGGAAGG 80901 || || || || | ||| |||| | | | ||| | | || || ||||||| || Sbjct 93692 ACCTCGTGCAGCTGCTGGAAGTTGTAGCAGTTGTTGTCATAATCGACGTATGCCGGCAGA 93633 Query 80902 CTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCC 80961 | ||| ||||| ||||| || || ||||| || | | | |||||| ||| || Sbjct 93632 GCAATGGAAGCCAGGTTGCAGACAGCGACCTCATCCGGGGCCGAGTACTCGATGATCTCG 93573 Query 80962 GTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTT-GCA 81020 ||||| | ||||| || || |||||||| |||||||| ||| ||| || Sbjct 93572 GTGCAGAGGTTAGAGCTGCGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTCCGGTTTGCG 93513 Query 81021 AGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTC 81080 | || ||||| ||| | ||| |||| |||||| ||| | || |||||||| | Sbjct 93512 TGA-TCTTTGTACAGCATAAAGGGGTTACCAGTCTCGGTCTGAGCCTCAAGGATGGCATA 93454 Query 81081 CCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA 81140 ||| | || | ||||| | ||| ||| ||| || | | ||||| |||| Sbjct 93453 CCACAGCTTCTGGGCCTTCAGTGTCTTACGGCCGCGGCCCTCCTGCTCGTACTTCTCGTA 93394 Query 81141 AGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACA 81199 | || |||| |||||| | ||| | | |||| | ||||||||||| ||||||| Sbjct 93393 GAGGGCCTCAAACTCCTCACCGTAGCAGT-CGGCGAGGCCCGGGCACTCGTTGGGGCACA 93335 Query 81200 TCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGG 81259 | ||| |||||| || ||||| || ||||||||| |||||||||||||| | Sbjct 93334 TAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAACAGATCAGGGATCCAGAGAG 93275 Query 81260 CGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 | ||| ||||| || ||| || |||||| | ||| ||||| |||| ||||| Sbjct 93274 CAAGGAAAAGGTCACG--AGCTCGGATCTCCTCCTTACCGTGGTTCTTCCGCAGGTCGAG 93217 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG 81377 || || | || || || ||||| ||||| || || | |||| | || | |||| Sbjct 93216 GAACTCGAAGACATCAGCGTGCCACGGCTCGAGGTAAATAGCGAAGGCACC---GGGACG 93160 Query 81378 ------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431 ||||||||||| ||| ||||||||||| ||| || || |||| ||| || | Sbjct 93159 CTTGTTGCCACCCTGGTCGACATAACGGGCAGTGTTGTTGAAGACTCGCAGCATGGGAGT 93100 Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCT 81491 ||| || | || |||||| || || |||| ||| || |||| || | | Sbjct 93099 GATGCCGTTGGAGGTACCGTTGGTGCCAGCGATGTACGAGCCGGTGGCACGGATACGGTG 93040 Query 81492 GATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTC 81551 || || |||||||| || | | ||| || ||| ||||| || | || || Sbjct 93039 GACGTTCAGGCCGATGCCTCCGGCCATCTTGGAGATCATGGCACATGTCTTGAGTGTGTC 92980 Query 81552 ATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGG 81611 ||| || ||||||||||| || | |||||||| | | ||| || ||||| ||| || Sbjct 92979 ATAGATGCCCTCGATGCTGTCCTCCTTCATGTCGACGAGGAAGCAAGATGACAGCTG-GG 92921 Query 81612 GCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 ||| | ||| |||||||| ||||| || | || || |||| | |||||||| Sbjct 92920 GCTGGGGAGTGCCAGCATTGAATAGTGTGGGCGAGGCATGGGTGAAGAACTTGTTTGACA 92861 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 | |||| ||||| || |||| | | ||| || || || || | || |||| Sbjct 92860 TGAGGTTGTAGGTCTCGATGACCCTCTCCACATCATCGCCCCAGATGCCAACTGCAACAC 92801 Query 81731 GCATAAACATGTACTGGGGCGTCTCG 81756 |||| | ||||| ||| ||| |||| Sbjct 92800 GCATGATCATGTGCTGTGGCCGCTCG 92775 >seq1489 Length=43664 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| | Sbjct 22892 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 22951 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | || ||||||||||||||||| || || || |||||| Sbjct 22952 GATACTATCGACAACGTAAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 23011 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| |||||||||| || || || | ||||| || Sbjct 23012 CAGCGCCTCATCTTTGCTGGAAAGCAGCTCGAGGATGGCCGGACTCTGTCCGACTACAAC 23071 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || ||||| || || || | || || ||||||||| Sbjct 23072 ATTCAGAAGGAGTCTACTCTGCACCTCGTACTCCGCCTCCGCGGTGGA 23119 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || ||||| ||||| | Sbjct 22664 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCT 22723 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | || ||||||||||||||||| || || || || ||| Sbjct 22724 GATACTATCGACAACGTAAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGATCAG 22783 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || |||||||| ||||| | || ||||| | ||||| || Sbjct 22784 CAGCGCCTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGCACCCTCTCCGACTACAAC 22843 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || || ||| | ||||| || || || Sbjct 22844 ATCCAGAAGGAATCAACCCTCCACCTCGTCCTTCGTCTCCGTGGCGG 22890 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || || || ||||| ||||| Sbjct 23119 AATGCAGATCTTTGTCAAGACCCTGACGGGGAAGACGATCACGCTCGAGGTGGAGTCGTC 23178 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || | ||| | || ||||||||||||||||| || || |||||||| Sbjct 23179 GGACACGATTGACAACGTCAAGTCAAAGATTCAGGACAAGGAGGGCATCCCACCAGACCA 23238 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||| ||||| || || || || || | || ||||| | ||||| || Sbjct 23239 GCAGCGTCTCATTTTCGCTGGCAAACAGCTGGAAGACGGCCGGACCCTCTCTGACTACAA 23298 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGAC 27634 |||| ||||| || || || || | || ||||||| || || |||| Sbjct 23299 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTGCGTCTCCGTGGCGGAC 23348 >seq427 Length=47822 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| || ||||| || || |||||||| || || |||||||| ||||| Sbjct 19168 ATCATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTGGAGTCT 19227 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | ||| | ||| | || || |||||||||||||| || || |||||| Sbjct 19228 TCCGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGAC 19287 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| || || || || || ||||| |||||||||| || ||||| | ||||| Sbjct 19288 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 19347 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || || || || |||| || || ||||| Sbjct 19348 AACATCCAGAAGGAGTCCACCCTCCACCTCGTGCTGCGCCTGCGTGGTGG 19397 >seq1253 Length=142092 Score = 149 bits (164), Expect = 7e-31 Identities = 219/310 (71%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 31954 GATATCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTG 32013 |||| | |||||||||||| ||| | ||||||||| ||||| ||||||||||| Sbjct 124848 GATAACCTGCGGTCCATTCCCTCCGTTGTGGACGGCCTGAAGCCAGGTCAGCGCAAGGTC 124789 Query 32014 ATATACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGC 32073 || ||||||||| ||||| |||||| ||| |||| |||||| | || || | ||| Sbjct 124788 ATCTACGCCTGCTTCAAGCGCAACCTGACGAAGGACAAGAAGGTTGTTGAGTTGGCTGGC 124729 Query 32074 TACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTC 32133 ||||| | || || || ||||| ||||| || || | || | ||| ||||| | Sbjct 124728 TACGTCTCCGAACAGACTGCCTACCACCATGGTGAAGTCTCCTTGCAGCAGACCATCATT 124669 Query 32134 AACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAG 32193 || || ||||||||||| || | || ||| | ||| | || ||||| || | Sbjct 124668 GGTCTCGCCCAGAACTTTGTTGGATCGAACAACATAAACATTCTGGAGCCCAGCGGTAAC 124609 Query 32194 TTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGT 32253 || || |||| ||||||||||| | || | || ||| | |||||||||||||| || Sbjct 124608 TTCGGTTCCCGTCTCGCCGGTGGTAGTGACTCGGCCAGCGCTCGTTACATCTTCACGCGG 124549 Query 32254 CTCGCACCTT 32263 || | |||| Sbjct 124548 CTGTCGCCTT 124539 >seq28 Length=192849 Score = 116 bits (128), Expect = 4e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| || ||||| || || |||||||| || || || ||||| ||||| ||| | ||| Sbjct 42386 CTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCCTCTGACACCAT 42445 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | || | ||| | || || |||||||||||||| || || || ||||||||||| || Sbjct 42446 CGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGACT 42505 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAA 27593 || || || || ||||| || ||||||| || ||||| | ||||| || |||| || Sbjct 42506 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATCCAGAA 42565 Query 27594 GG 27595 || Sbjct 42566 GG 42567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297061865520