Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq709 143 2e-29 >seq709 Length=37314 Score = 143 bits (158), Expect = 2e-29 Identities = 267/382 (70%), Gaps = 14/382 (4%) Strand=Plus/Minus Query 30082 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 30141 ||||||||| || || ||||| | ||| ||||||||| |||| || |||||| Sbjct 18280 GTGGCACGGCGGCAGCGCCATCTTCTTGAGGTCCGCGGGGTTCCACGCGCTCATGATGAT 18221 Query 30142 GCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30198 ||| | ||| | ||||| |||| | || || ||| || |||||| || || Sbjct 18220 GCGGCGGTCGTACGGGTTCGTCCTCAGCTTGTGGATCACCTCGGC---CAGCTGGTCGAC 18164 Query 30199 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30258 ||| |||| |||||| ||||| ||| |||||| || || || |||| |||||| Sbjct 18163 GCCCTGGCCCGCGTAGTCGGCCCTGGCGTCTACGTACTCGGCGCCAAAGTGCCGCCACTG 18104 Query 30259 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC-TTGTCCA 30317 |||||||||||| || || ||||| || | || | ||| | ||||| | |||| | Sbjct 18103 GAACCCGTACACGGGGCCAAGGTCGCCGGCCTCGCGGTG-GCCCAGCCCGACGCTGTCGA 18045 Query 30318 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGC-TCTTTG 30376 | || | || |||||| ||||||||||||| ||||||| ||| |||||| | | Sbjct 18044 GGTACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACCCCCTGCTCCGAGAGCGACAGCG 17985 Query 30377 --GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30434 ||| ||| | ||| | | |||||||||||||||| | | ||| |||||| |||| Sbjct 17984 ACGAG-GTGTCG-CCCGAT-ATGAACCACAGCAGCTCCGCGAGGACCGCCTTCTGGAAGA 17928 Query 30435 CCCTCTTGGTCGTGAGGAGGGG 30456 | | ||| || || ||||| || Sbjct 17927 CGCGCTTCGTGGTCAGGAGTGG 17906 Score = 105 bits (116), Expect = 5e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 29852 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCT 29911 ||||||||||| ||||| | |||| || |||| ||| ||||||||| ||||| Sbjct 18606 GGCTCCCTCTCCAGCTGCACCCGGAGCGCGTCGACGTGGTCCGCGTAGACGTGCGCGTCG 18547 Query 29912 CCCAGGTTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 29970 |||| | ||| | | ||| ||||| | || || ||||| || ||||||| ||| Sbjct 18546 CCCATGACGTGCGTGAGGCTC-CCCGGGACGAGGTCGCACACGTGCGCGATCATGTGCGT 18488 Query 29971 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 30030 || || ||||||||||||||||| || || || || || |||||||| | || | ||| Sbjct 18487 CAGCAGCGAGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCGCTG 18428 Query 30031 GTAGAGCTGACA 30042 ||| ||||| || Sbjct 18427 GTACAGCTGGCA 18416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406301134980132