Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq709 158 1e-33 >seq709 Length=37314 Score = 158 bits (174), Expect = 1e-33 Identities = 280/402 (70%), Gaps = 6/402 (1%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 || || ||||| ||||| || || | | ||||| || ||| |||||||||||||||| Sbjct 17906 CCACTCCTGACCACGAAGCGCGTCTTCCAGAAGGCGGTCCTCGCGGAGCTGCTGTGGTTC 17965 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 | ||| | ||| | | ||||||| | |||||| ||||||||||||| Sbjct 17966 ATATCGGGCGACACCTCGTCGCTGTCGCTCTCGGAGCAGGGGGTCAAGATCTGGGACGGC 18025 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCG--GGGGTTCCCATCTCGGGAGGAGGGCGACT 34400 |||| || || || | || |||| ||| ||| | | | || |||| |||||| Sbjct 18026 AACGGCTCGCGCGAGTACCTCGACA-GCGTCGGGCTGGGCCAC-CGCGAGGCCGGCGACC 18083 Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 | ||||| || ||||||||||||||| | |||||||| || ||||| || | || | | Sbjct 18084 TTGGCCCCGTGTACGGGTTCCAGTGGCGGCACTTTGGCGCCGAGTA-CGTAGACGCCAGG 18142 Query 34461 -CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 | ||||| |||| ||||| | ||||||||| | |||||| ||| ||| | | Sbjct 18143 GCCGACTACGCGGGCCAGGGCGTCGACCAGCTGGCCGAGGTGATCCACAAGCTGAGGACG 18202 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||| | ||| | | ||| | ||| ||||||||||||| ||| ||| |||| Sbjct 18203 AACCCGTACGACCGCCGCATCATCATGAGCGCGTGGAACCCCGCGGACCTCAAGAAGATG 18262 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG 34621 ||||| || |||||||||| || || ||||||||| || Sbjct 18263 GCGCTGCCGCCGTGCCACATGTTCGCGCAGTTCTACGTCTCG 18304 Score = 158 bits (174), Expect = 1e-33 Identities = 280/402 (70%), Gaps = 6/402 (1%) Strand=Plus/Minus Query 6724 CGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTT 6783 || ||||||||| || || |||||||||| || ||||||||| ||| ||| Sbjct 18304 CGAGACGTAGAACTGCGCGAACATGTGGCACGGCGGCAGCGCCATCTTCTTGAGGTCCGC 18245 Query 6784 CGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT 6843 ||||||||||||| ||| | ||| | | ||| | |||||| | ||| ||| ||| Sbjct 18244 GGGGTTCCACGCGCTCATGATGATGCGGCGGTCGTACGGGTTCGTCCTCAGCTTGTGGAT 18185 Query 6844 CACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGATACT 6902 ||| | ||||||||| | ||||| |||| ||||| | | | || | || |||| Sbjct 18184 CACCTCGGCCAGCTGGTCGACGCCCTGGCCCGCGTAGTCGGCCCTGGCGTCTACG-TACT 18126 Query 6903 CCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAG 6962 | || |||||||| | ||||||||||||||| || ||||| | |||||| |||| || | Sbjct 18125 CGGCGCCAAAGTGCCGCCACTGGAACCCGTACACGGGGCCAAGGTCGCCGGCCTCGCG-G 18067 Query 6963 ATGGGAACCCC--CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCAC 7020 | | ||| ||| |||| || | || || || |||| ||||||||||||| || Sbjct 18066 TGGCCCAGCCCGACGC-TGTCGAGGTACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGAC 18008 Query 7021 CCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTC 7080 |||| | ||||||| | | ||| | ||| | |||||||||||||||| | Sbjct 18007 CCCCTGCTCCGAGAGCGACAGCGACGAGGTGTCGCCCGATATGAACCACAGCAGCTCCGC 17948 Query 7081 GACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 || || ||||| | | || || ||||| ||||| || || Sbjct 17947 GAGGACCGCCTTCTGGAAGACGCGCTTCGTGGTCAGGAGTGG 17906 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||| || || || || | |||||||| | || |||||||||||||| || || Sbjct 18415 CTGCCAGCTGTACCAGCGCTCCTGCGACATGGGCCTGGGCGTGCCGTTCAACATCGCCAG 18474 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAG-CTGG 34754 ||| | ||||| ||| |||||||||| || || ||| | ||| |||||| || Sbjct 18475 CTACTCGCTGCTGACGCACATGATCGCGCACGT-GTGCGACCTCGTCCCGGGGAGCCTCA 18533 Query 34755 TGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCA 34812 || |||| |||| || ||||| ||||| | ||||| |||| ||||||| | || Sbjct 18534 CGC--ACGTCATGGGCGACGCGCACGTCTACGCGGACCACGTCGACGCGCTCCGGGTGCA 18591 Query 34813 GCTGCAACGAGAGCCCCG 34830 |||| | | ||||| || Sbjct 18592 GCTGGAGAGGGAGCCGCG 18609 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 6515 CGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA 6574 || ||||| | | |||||| | ||||||| |||| ||||| | ||||| ||||| Sbjct 18609 CGCGGCTCCCTCTCCAGCTGCACCCGGAGCGCGTCGACGTGGTCCGCGTAGACGTGCGCG 18550 Query 6575 TCCCCCA--ACGTATGCACCAG-CTCCCCAGGAACCAACCCCACGACATGAGCGATCATG 6631 || |||| |||| || || |||||| ||| | ||| || || ||||||||| Sbjct 18549 TCGCCCATGACGT--GCGTGAGGCTCCCCGGGACGAGGTCGCAC-ACGTGCGCGATCATG 18493 Query 6632 TACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGAT 6691 | ||| ||||| | ||| || || |||||||||||||| || | |||||||| | || Sbjct 18492 TGCGTCAGCAGCGAGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAG 18433 Query 6692 CGTTGATAGAGCTGGCAG 6709 || || || ||||||||| Sbjct 18432 CGCTGGTACAGCTGGCAG 18415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448251916263120