Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq427 167 5e-36 seq1489 159 8e-34 seq28 152 1e-31 seq1209 86.0 1e-11 >seq427 Length=47822 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | ||||| Sbjct 19382 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 19323 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| ||||| || ||||| || || | || ||||||||| Sbjct 19322 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 19263 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || ||||||||||| || || ||||| || ||||| ||| Sbjct 19262 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 19203 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 19202 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19171 >seq1489 Length=43664 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||||||| || ||| Sbjct 23331 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCGTCT 23272 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| ||||| || || || || ||||| || || | || ||||||||| Sbjct 23271 TCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 23212 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| || ||||| || || ||||| || || |||||||| ||||||||| Sbjct 23211 TGAATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCACCTCGAGCGTGATCGTC 23152 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || ||||| || ||||| ||||| | ||||||| Sbjct 23151 TTCCCCGTCAGGGTCTTGACAAAGATCTGCATT 23119 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||| ||||| || || ||||| || || | || |||| ||||| Sbjct 23103 AGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTCCGGCCATCC 23044 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| ||||| || |||||||| || | || ||||||||| Sbjct 23043 TCGAGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 22984 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| || |||||| || |||||||| ||||| ||| Sbjct 22983 TGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTC 22924 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 22923 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22892 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || || || || |||||||| || || | ||||| | || || Sbjct 22875 AGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 22816 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| ||||| || || ||||| || | || ||||||||| Sbjct 22815 TCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 22756 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| || |||||| || |||||||| ||||| ||| Sbjct 22755 TGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTC 22696 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 22695 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22664 >seq28 Length=192849 Score = 152 bits (168), Expect = 1e-31 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 42565 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 42506 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || |||||||| || | || ||||||||||||||||| || ||||| ||| Sbjct 42505 AGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCG 42446 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||||||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 42445 ATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 42387 >seq1209 Length=374226 Score = 86.0 bits (94), Expect = 1e-11 Identities = 184/275 (67%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| | | | |||||||||| || ||||| | || Sbjct 93540 GTTCTTCTGGTTGCTCTTCCGGTTTGCGTGATCTTTGTACAGCATAAAGGGGTTACCAGT 93481 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | |||||| | || ||| || ||| |||| |||||| | ||||| | | Sbjct 93480 CTCGGTCTGAGCCTCAAGGATGGCATACCACAGCTTCTGGGCCTTCAGTGTCTTACGGCC 93421 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || || | ||||||||| | |||||| |||| || ||| || ||| || | Sbjct 93420 GCGGCCCTCCTGCTCGTACTTCTCGTAGAGGGCCTCAAACTCCTCACCGTAGCAGTCGGC 93361 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 ||| || || ||| |||||||| | || |||| | ||||| | || || || || Sbjct 93360 GAGGCCCGGGCACTCGTTGGGGCACATAAGGGTCCAGTCACCGTTCTTCTCGACCCGCTT 93301 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGCATAGAAAA 178367 |||||| || |||| | |||||| ||| ||||| Sbjct 93300 CATGAACAGATCAGGGATCCAGAGAGCAAGGAAAA 93266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159124212590915