Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1489 114 1e-20 >seq1489 Length=43664 Score = 114 bits (126), Expect = 1e-20 Identities = 158/213 (74%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || ||||| ||| || || || || || || | || || || |||| || Sbjct 23329 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCGTCTTC 23270 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||||||||| || || || |||||||||||||| |||||| | || ||| |||||| Sbjct 23269 CAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGG-ATGCCCTCCTTGTCC- 23212 Query 39194 TGATTTTCTG-TTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||| | | || |||| ||| | | | ||| || ||||||||| || | |||||| | Sbjct 23211 TGAATCTTTGACTTGA-CGTTGTCAATCGTGTCCGACGACTCCACCTCGAGCGTGATCGT 23153 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||||||| || || |||||||| ||||| Sbjct 23152 CTTCCCCGTCAGGGTCTTGACAAAGATCTGCAT 23120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429535805152223