Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq709 134 1e-26 seq107 82.4 6e-11 >seq709 Length=37314 Score = 134 bits (148), Expect = 1e-26 Identities = 265/382 (69%), Gaps = 14/382 (4%) Strand=Plus/Minus Query 27348 GTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGAT 27407 ||||||||| || || ||||| | ||| ||||||||| |||| || |||||| Sbjct 18280 GTGGCACGGCGGCAGCGCCATCTTCTTGAGGTCCGCGGGGTTCCACGCGCTCATGATGAT 18221 Query 27408 GCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCCACGGCGTTTTGCAGCTGATCCAC 27464 ||| | ||| | ||||| |||| | || || ||| || |||||| || || Sbjct 18220 GCGGCGGTCGTACGGGTTCGTCCTCAGCTTGTGGATCACCTCGGC---CAGCTGGTCGAC 18164 Query 27465 CCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTG 27524 ||| |||| |||||| |||| ||| |||||| || || || |||| ||| || Sbjct 18163 GCCCTGGCCCGCGTAGTCGGCCCTGGCGTCTACGTACTCGGCGCCAAAGTGCCGCCACTG 18104 Query 27525 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC-TTGTCCA 27583 |||||||||||| || || ||||| || | || | ||| | ||||| | |||| | Sbjct 18103 GAACCCGTACACGGGGCCAAGGTCGCCGGCCTCGCGGTG-GCCCAGCCCGACGCTGTCGA 18045 Query 27584 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC-TCTTTG 27642 | || | || |||||| ||||||||||||| ||||||| ||| |||||| | | Sbjct 18044 GGTACTCGCGCGAGCCGTTGCCGTCCCAGATCTTGACCCCCTGCTCCGAGAGCGACAGCG 17985 Query 27643 --GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 27700 ||| ||| | ||| | | |||||||||||||||| | | ||| |||||| |||| Sbjct 17984 ACGAG-GTGTCG-CCCGAT-ATGAACCACAGCAGCTCCGCGAGGACCGCCTTCTGGAAGA 17928 Query 27701 CCCTCTTGGTCGTGAGGAGGGG 27722 | | ||| || || ||||| || Sbjct 17927 CGCGCTTCGTGGTCAGGAGTGG 17906 Score = 109 bits (120), Expect = 4e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 ||||||||||| ||||| | |||| || ||||| ||| ||||||||| ||||| Sbjct 18606 GGCTCCCTCTCCAGCTGCACCCGGAGCGCGTCGACGTGGTCCGCGTAGACGTGCGCGTCG 18547 Query 27178 CCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGT 27236 |||| | ||| | | ||| ||||| | || || ||||| || ||||||| ||| Sbjct 18546 CCCATGACGTGCGTGAGGCTC-CCCGGGACGAGGTCGCACACGTGCGCGATCATGTGCGT 18488 Query 27237 GAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTG 27296 || || ||||||||||||||||| || || || || || |||||||| | || | ||| Sbjct 18487 CAGCAGCGAGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCGCTG 18428 Query 27297 GTAGAGCTGACA 27308 ||| ||||| || Sbjct 18427 GTACAGCTGGCA 18416 >seq107 Length=124689 Score = 82.4 bits (90), Expect = 6e-11 Identities = 109/145 (75%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 48545 AGATGGGTGACAAGTTTGCGTC-CTTCACGGCGCAAAAGGGGACATGTGGAGCCGTCCTG 48603 |||| |||||||||||||| || | |||||| || ||||| || ||| | | ||| Sbjct 84859 AGATTGGTGACAAGTTTGCTTCTCGTCACGGT-CAGAAGGGCACTATTGGTGTCA-CCT- 84915 Query 48604 ACC--CAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACC 48661 ||| |||||||||||||| ||| || |||||| ||| ||| |||||||||||| Sbjct 84916 ACCGTCAGGAGGACATGCCTTTCAGTCGCGAAGGGGTGACGCCTGACATCATCATCAACC 84975 Query 48662 CCCACGCCTTTCCCTCCAGGATGAC 48686 |||||||| | || || | ||||| Sbjct 84976 CCCACGCCATCCCGTCACGTATGAC 85000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369498774196601