Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq427 131 4e-25 seq1489 105 2e-17 seq28 91.5 3e-13 >seq427 Length=47822 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| |||| | || | ||||| Sbjct 19382 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 19323 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | | ||| || ||||| || Sbjct 19322 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 19263 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 19262 TGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATGGTC 19203 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| ||||||||||||| |||||| Sbjct 19202 TTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 19171 >seq1489 Length=43664 Score = 105 bits (116), Expect = 2e-17 Identities = 157/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || || || ||||||||||| || || |||||||| |||| | ||| | Sbjct 23110 GAGGCGGAGTACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTCCG 23051 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || || ||||| || || ||||| || | ||||||||| | | ||| || Sbjct 23050 GCCATCCTCGAGCTGCTTT--CCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCC 22993 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || || || | || | | || || ||| || || || Sbjct 22992 TCCTTGTCCTGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGG 22933 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||| ||||||| |||||| Sbjct 22932 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22892 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| || | | || | || ||||| | Sbjct 23326 CAAG-TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCGTCTTCCA 23268 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || ||||| || || | ||||||||| | | ||| || ||||| || |||| Sbjct 23267 GCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTCCTGAA 23208 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||||| | || | |||| || ||| || || || || || || || | Sbjct 23207 TCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCACCTCGAGCGTGATCGTCTTCC 23148 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| || ||||| || |||| ||||||| Sbjct 23147 CCGTCAGGGTCTTGACAAAGATCTGCATT 23119 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || || || ||||||||||| |||| | || | || || Sbjct 22875 AGGACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 22816 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | |||||| || | | ||| || ||||| || Sbjct 22815 TCAAGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCC 22756 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || || | || | | || || ||| || || || || || || Sbjct 22755 TGAATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTC 22696 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||| ||||||| |||||| Sbjct 22695 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 22664 >seq28 Length=192849 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | || | ||||| || || || ||||||||||| Sbjct 42565 TTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 42506 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||| | | ||| || ||||| || || || || ||||| | || Sbjct 42505 AGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCG 42446 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| || ||| || || || || || || |||||||| || |||||||||||| Sbjct 42445 ATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAG 42386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153793140391441