Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20aspalathi_20[genbank_20GCA_5F001447215.1_202015-11-20] 1,871 sequences; 55,029,878 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq427 163 2e-35 seq1489 123 2e-23 seq28 122 6e-23 >seq427 Length=47822 Score = 163 bits (180), Expect = 2e-35 Identities = 177/233 (76%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||| ||||| || ||| |||||| ||||||||||| |||| | Sbjct 19397 CCACCACGCAGGCGCAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 19338 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || || |||||||| ||||| ||||||| |||||||| |||| || Sbjct 19337 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCTGGGGGG 19278 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| ||| || ||| | |||||||||| || |||| Sbjct 19277 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT--CGATGGTGTCGGAAGACTCCA 19220 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 |||| | || || ||||| ||||||||||||||||||||||| ||||||||| Sbjct 19219 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATGATG 19167 >seq1489 Length=43664 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||| ||| ||||| |||||| ||||||||||| || | ||| || |||| Sbjct 23332 CAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCGTC 23273 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| || || || || || | ||||||||| |||| || | || ||||| || Sbjct 23272 TTCCAGCTGTTTGCCAGCGAAAATGAGACGCTGCTGGTCTGGTGGGATGCCCTCCTTGTC 23213 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 | ||||| ||| | | | || ||||| | || |||||||| | ||| ||||| Sbjct 23212 CTGAATCTTTGACTTGACGTTGTCAATCGTGTCCGACGACTCCACCTCGAGCGTGATCGT 23153 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||| |||||||| || ||||| ||||| Sbjct 23152 CTTCCCCGTCAGGGTCTTGACAAAGATCTGCAT 23120 Score = 118 bits (130), Expect = 8e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||||| ||||||||||| |||| ||| ||| |||| || Sbjct 22872 ACGAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 22813 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| ||||||||||| | || | || ||||| ||| Sbjct 22812 AGTTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCAGGGGGGATGCCCTCCTTGTCCTGA 22753 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || || || | ||| || ||||| | || || ||||| Sbjct 22752 ATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTG 22693 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || ||||||||||| |||||||| |||||| || Sbjct 22692 CCGGTGAGGGTCTTGACGAAGATCTGCATGGTG 22660 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| || |||||||| |||| || || | || || Sbjct 23100 ACGAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTCCGGCCATCCTCG 23041 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || ||||| ||| Sbjct 23040 AGCTGCTTTCCAGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGA 22981 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || || || | ||| || ||||| | || || ||||| Sbjct 22980 ATCTTGGACTTTACGTTGTCGATAGTATCAGAGGACTCGACCTCGAGGGTGATGGTCTTG 22921 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||||||||| |||||||| ||||| Sbjct 22920 CCGGTGAGGGTCTTGACGAAGATCTGCAT 22892 >seq28 Length=192849 Score = 122 bits (134), Expect = 6e-23 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| ||| ||| | || || |||||||| ||||| |||| Sbjct 42567 CCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 42508 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||| || | || | || ||||| ||| |||||| ||| | | Sbjct 42507 TCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGACTTGACGTTGT 42448 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | |||||||| | ||| |||||||| | || || ||||| ||||| ||||||||||||| Sbjct 42447 CGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 42388 Query 44328 AG 44329 || Sbjct 42387 AG 42386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982191206407