Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq9330 96.9 7e-15 seq4276 93.3 9e-14 seq1846 91.5 3e-13 >seq9330 Length=3055 Score = 96.9 bits (106), Expect = 7e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 254020 ACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAACCCTGTTGG 254079 ||||||||||||| || || || ||||| |||||||| || || ||||| | | | | Sbjct 2486 ACGGTCCTCCCGGTACTGGAAAAACGTCCACCATCCTTGCCCTCGCCCGCCGCATCTATG 2427 Query 254080 GCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGCGGGTTGG 254139 ||| | ||||||||| || || ||||| |||||||| || ||||| || || | | Sbjct 2426 GCGTCGACAACATGAGACAGATGGTTCTCGAACTGAACGCCTCCGACGACCGTGGTATTG 2367 Query 254140 ACGTCGTCCGCGACAAGATCAAGACTTT 254167 |||| || ||||| | |||||||| || Sbjct 2366 ACGTAGTGCGCGAGCAAATCAAGACCTT 2339 >seq4276 Length=7260 Score = 93.3 bits (102), Expect = 9e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 254201 CTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCA 254260 ||| || || |||||| || | || ||||||||||| |||| ||||||| || || || Sbjct 4524 CTGCCCACCGTTCAAGATCATCATTCTGGACGAGGCCGACAGCATGACGCAGGATGCTCA 4583 Query 254261 GTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTG 254320 | ||| |||||||| |||||||| || || | | ||||| || || || | || Sbjct 4584 GAGCGCGCTCCGCCGGACGATGGAAACATACAGCAAGATTACGCGGTTCTGTCTCATCTG 4643 Query 254321 CAACTACGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 ||||||||| | ||||||| ||| ||||| ||| ||| ||| || || |||| Sbjct 4644 CAACTACGTCACACGCATCATCGACCCCCTGGCAAGTCGTTGCAGCAAATTCCGCTTCA 4702 >seq1846 Length=19237 Score = 91.5 bits (100), Expect = 3e-13 Identities = 201/296 (68%), Gaps = 18/296 (6%) Strand=Plus/Plus Query 254073 CTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGAACGC 254132 ||| ||||||| | ||| | ||| ||| ||||| ||||| ||||| || ||||| || Sbjct 5335 CTGCTGGGCGACGCCTACAAG-GAG-GCG-GTGCTGGAGCTCAACGCCTCGGACGAGCGA 5391 Query 254133 GGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAAGATGTCGATTTCGTCGTTC 254192 || | || || || || || ||||||| ||| | ||| | | | || | Sbjct 5392 GGAATCGATGTGGTGCGGAACCGGATCAAGGGCTTCGCGCAGAAGAAGGTCACGCTG--- 5448 Query 254193 CAACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCC 254252 ||||| | ||||| |||| |||| |||||||||||||| |||| ||||||| | Sbjct 5449 ----CCGGCGGGCCGCCA--CAAGATCGTCATCCTGGACGAGGCCGACAGCATGACGTCG 5502 Query 254253 GACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGC 254312 | ||||||| || || | || |||||||||| ||||| |||||| ||| | Sbjct 5503 GGCGCGCAGCAGGCGCTGAGGCGGACGATGGAGATTTACTCCAACACGACGCGGTTTGCC 5562 Query 254313 CTGGTGTGCAACTACGTGTC---GAAGATCATCGCCCCGCTGGCTTCTCGGTGCGC 254365 | | ||||||| | ||| |||||||||| |||||| || ||||| || Sbjct 5563 TTCGCGTGCAACCA---GTCCAACAAGATCATCGAGCCGCTGCAGTCGCGGTGTGC 5615 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 115402 ATCGCACATCTGCTCTGAATCGGTTCGATGATTTTGGTGGAGTTGTTGCAGACTATGATG 115461 |||||||| | ||| | ||| |||||||| ||| |||| | |||||| | | | Sbjct 5618 ATCGCACACCGCGACTGCAGCGGCTCGATGATCTTGTTGGACTGGTTGCACGCGAAGGCA 5559 Query 115462 AACCGCGTCGTGCTCGAGTAAACATCCATGATCCGTCGCAGCGCCTGGAAAGCACCAGGT 115521 |||||||||||| | ||||||| ||||| |||| | ||||||||| || || | Sbjct 5558 AACCGCGTCGTGTTGGAGTAAATCTCCATCGTCCGCCTCAGCGCCTGCTGCGCGCCCGAC 5499 Query 115522 GTCATCGAGTCTGCCTCGTCGAGAACGACAATCTT 115556 ||||| ||| |||||||| || | ||| ||||| Sbjct 5498 GTCATGCTGTCGGCCTCGTCCAGGATGACGATCTT 5464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073582295368576