Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq12282 125 1e-23 seq7991 91.5 2e-13 >seq12282 Length=8984 Score = 125 bits (138), Expect = 1e-23 Identities = 159/218 (73%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| | ||| ||||| ||| ||||||||||||||| | | ||||| |||||||| Sbjct 7783 AACAGGAGACAAGCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATTAGCTCGTTGGAG 7724 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| || || ||||| || ||||| || || || || |||| || Sbjct 7723 AAGGTCAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAAATGGAGGCGAATGCGCCG 7664 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 |||||||| || || || || || ||||||| |||| || |||| || | Sbjct 7663 CTGAAGAAGATGCCCTCCACGGCAGCGAAGGCAACCAGTCGCTGGGCATAGGTGGACTCG 7604 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | ||| || |||||||| ||||||| ||||||||||| Sbjct 7603 CGGTCCTGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 7566 >seq7991 Length=9451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 343/532 (64%), Gaps = 7/532 (1%) Strand=Plus/Plus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 || ||||| ||||| | || || || | || || || ||||||||||| || || ||| Sbjct 1175 GTGAACTGGATGGGTGCGGCAGCTGCCTGAGTGCGGAGGTAGTACATGCCAGTCTTGAGA 1234 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCTAGGATCGGCTAT 70919 ||||| |||| || || |||||||| || | ||| || | | || || || Sbjct 1235 CCGAGCTTCCAGCCCGCGAAGTGCATACTGGTGATCTTGCCCATGGAT-GGCTCCCGCAT 1293 Query 70920 GTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 70979 ||| || |||| |||||| || || || ||||| || | ||| |||| ||| | | Sbjct 1294 GTGGATGTTCAGAGACTGAGACTGGTCAATAAAGGCACCACGGTCAGCAGACATCTGCAC 1353 Query 70980 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAG 71039 || ||| | || | || ||||| | || || |||| ||| ||||| | || | Sbjct 1354 AATGGTCCTCTGAGAGATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCAGCCGGGAT 1413 Query 71040 GTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATT 71096 | | | | |||| ||||| ||| | || || ||||| | || || || | ||| Sbjct 1414 GCTGGGAATGCTCTGGATGGAACCATCCTCGGCGATAATACGGTTCTTCATGGCCTCAGA 1473 Query 71097 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCC 71156 ||| || ||| || | | | || || || || || || || || || || || Sbjct 1474 CCACAAGCCAAGCTCTGTCAGATCCCTGAGAAGCCACGGGTTGACGACCTGGAACTCGCC 1533 Query 71157 AGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCC 71216 || | || | || ||| || || ||| || || || | ||||||| || || Sbjct 1534 AGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCATTGTTACC 1593 Query 71217 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACC 71276 || || || | || || ||||| ||||| ||||||| ||| | ||| || | | ||| Sbjct 1594 CAGGATCTGCGACGTCGAAGCAGTGGGCATTGGTGCCAGCAACAAACTGTTGCGTACACC 1653 Query 71277 A-TGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 | | | | ||| || || || || | ||||| | |||||| || || || Sbjct 1654 AGTCTCCT-TGATCTTGTCCTTGAGCGCATCCCAGTCCCAAAGGTCGGAAGG 1704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671026935190320