Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5209 143 2e-29 seq9614 140 2e-28 seq11228 91.5 1e-13 >seq5209 Length=10550 Score = 143 bits (158), Expect = 2e-29 Identities = 207/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||| | ||||| |||||||| ||| |||| | | ||||||||||| ||||||||| Sbjct 8004 GACCCCTTCTATCGCTACAAGATGGAGCGCCTTCAGACAAAGGTCGAGGGCAAGGGAAAC 7945 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 ||||| || ||||||||||||||| || |||||| || | |||| ||||| | | Sbjct 7944 GGTATCAAGACCGTCATTGTCAACCTGAGCAGCGTCGCTCAGTCCCTCGCCCGCCCCGGC 7885 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 ||||| || || || || || | ||| |||||||| ||||| | | || | ||| Sbjct 7884 TCCTACTTGATCAAGTACTTTGGCTTCGAGCTTGGCGCACAGACCAACATCGACCCCAAG 7825 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 | || || | ||| | ||||| | ||| | ||| ||||||| |||||| | ||||| Sbjct 7824 GATGATCGTTGGATCATCAACGGTGCCCATGAGTCTCCCAAGCTCCAGGACCTCCTTGAT 7765 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCG 6486 || || || | ||| || ||||| | | ||| | ||||| ||||||| Sbjct 7764 GGTTTCATCAAGAGGTTCGTCCTGTGCCACAAGTGCAAGAACCCCGAGACCG 7713 >seq9614 Length=750 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 320 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 261 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 260 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 226 >seq11228 Length=3802 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | |||||| || || || ||||||||| || ||||| |||||| Sbjct 373 CCACCCCGCAGACGAAGCACCAAGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCAGAC 314 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || || || || || || || || || ||||| || || | ||| Sbjct 313 AGTGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGTGGG 254 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| ||| || ||| || || | || || ||| || ||| Sbjct 253 ATGCCCTCCTTGTCCTGAATCTTAGACTTGACGTTGTCGATTGTGTCTGATGACTCGACT 194 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||||||||| || || || ||||||||| Sbjct 193 TCAAGAGTGATCGTCTTTCCCGTCAAGGTCTTGACAAAGATCTGCATG 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334892572414442