Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq11228 203 6e-47 seq4985 125 1e-23 seq1754 120 6e-22 seq5892 113 8e-20 seq2165 93.3 8e-14 seq7991 86.0 1e-11 >seq11228 Length=3802 Score = 203 bits (224), Expect = 6e-47 Identities = 181/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| ||||| ||||| ||||||||||| || || || Sbjct 373 CCACCCCGCAGACGAAGCACCAAGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCAGAC 314 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||||| |||||||| |||||||| || ||||| || || | ||| ||||| ||||| Sbjct 313 AGTGTCCGGCCATCTTCCAACTGCTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGTGGG 254 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| ||||| ||||||| ||| || ||| Sbjct 253 ATGCCCTCCTTGTCCTGAATCTTAGACTTGACGTTGTCGATTGTGTCTGATGACTCGACT 194 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || |||||||| | ||||||||| || |||||||| Sbjct 193 TCAAGAGTGATCGTCTTTCCCGTCAAGGTCTTGACAAAGATCTGCAT 147 >seq4985 Length=7965 Score = 125 bits (138), Expect = 1e-23 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || |||||||| || |||||||| || |||||| Sbjct 7812 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 7871 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || ||| Sbjct 7872 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 7931 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 |||||||||||||| || ||||| | |||||| Sbjct 7932 ATGCCTTCCTTGTCCTGGATCTTGGACTTGAC 7963 >seq1754 Length=10432 Score = 120 bits (132), Expect = 6e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 225751 GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTCCGGAGCT-GAG 225809 |||||| || | | ||| ||||||| |||||| || ||| |||| ||| || || | Sbjct 5636 GGTCATCTCAGTGTCAGCAGCGTCAAGGTCGTGCTCAACGAACACAGTCTTGACCTCGCT 5577 Query 225810 AAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGTACTCTTGC 225869 || | |||||| ||||| | || | || || ||||| | ||||| ||| | Sbjct 5576 CTGCTT-GGGGAAACCCTCGACTTGCTCGTTGTTGATGGCACGCATGAGGGTGGACTTTC 5518 Query 225870 CCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAGGCGCGTGG 225929 | || |||||||||||| ||| |||||| || || ||||||| | || ||| ||| Sbjct 5517 CGGCACCGTTGGGACCGCAGAGACCGTAACGACGGCCACGCTTGAGGCGGATGCGGGTGT 5458 Query 225930 AGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAGGTC 225984 ||| || ||||||||| |||| ||||| || |||||||| || ||||| ||||| Sbjct 5457 TGTTGAGCAGGATCTTGGCACCGTAGGCGAGCGAGAACTCACACTCGCAGAGGTC 5403 >seq5892 Length=3514 Score = 113 bits (124), Expect = 8e-20 Identities = 225/328 (69%), Gaps = 18/328 (5%) Strand=Plus/Plus Query 275249 ACGTCCTGGACGACAGCGATTCCCCGGACGTCAAGGAGCTCTCCGGGTTCTTTGGGTTTC 275308 ||||| |||||||| | | ||||| |||| | |||| ||| | || || || Sbjct 1424 ACGTCATGGACGACGGGGCCAACCCGGTCGTCCGGCAGCTGGCCGAGCGCTACGGCTTCA 1483 Query 275309 AATATCTCGTGCGCGACAACCGGCCGCATATGAAGAAGGCCGGCAACCTCCGGTCCGCCT 275368 | || |||||||| |||| |||| | |||||||| ||||||||||| | | | Sbjct 1484 ACTACACGGTGCGCGAGGACCGCCCGCGGCTCAAGAAGGCGGGCAACCTCCGCTGGACTT 1543 Query 275369 TTACCAAGACAGACGGCGAATTCTTTGTCATCTTTGACGCCGACTTCTGCCCAAGGCCCG 275428 || || || |||||| ||||||| |||||||||||||||||| ||||| | || | Sbjct 1544 TTGCCCGCACGAGCGGCGACTTCTTTGCCATCTTTGACGCCGACTTTTGCCCCCGCCCGG 1603 Query 275429 ACTTCCTCGAGGAGACACTTGGCAGGATGAAGGCAGATC--CCACGA-----TTGCCATC 275481 |||| | ||||| | | ||| | |||| || | |||| |||||||| Sbjct 1604 ACTTTTTGAAGGAG-CTCATGGTCG------AGCAGCTCGACGACGACGAGGTTGCCATC 1656 Query 275482 TTCCAAACTCCCCAGTTCTT-CGAG-CAGCGCAATGAGCAGAACTACGTGGAGAAGGGAG 275539 | || | || |||||||| || | || | ||||||||| | || ||| |||| | Sbjct 1657 GTGCAGAGCCCGCAGTTCTTCCGTGTCACTG--ATGAGCAGACGTGGGTCGAGCAGGGTG 1714 Query 275540 CCGGCGCCGTCCAGGAGCTCTTCTATCG 275567 ||||||| |||||||||||||| || Sbjct 1715 CCGGCGCGACGCAGGAGCTCTTCTACCG 1742 >seq2165 Length=4774 Score = 93.3 bits (102), Expect = 8e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 68356 TGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTT 68415 |||| |||||||| || ||||| | ||| || || |||||||| | ||||| || | Sbjct 1 TGCCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCTATGGTGTCGGAGGATTCGACCT 60 Query 68416 CCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 61 CGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 106 >seq7991 Length=9451 Score = 86.0 bits (94), Expect = 1e-11 Identities = 160/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 30920 CTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGA 30979 ||| | |||||||| ||| | ||| ||||| || | | | | | |||| || ||| Sbjct 1309 CTGAGACTGGTCAATAAAGGCACCACGGTCAGCAGACATCTGCACAATGGTCCTCTGAGA 1368 Query 30980 CAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCC---AATGACACG 31036 | |||||| |||||||||| | ||||||| |||| |||||| |||| | Sbjct 1369 GATCTCCCAGACGGTCTTGTAAAGGGCCTTGATATCAGCCGGGATGCTGGGAATG---CT 1425 Query 31037 TTGGATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACG 31096 |||||||| || | | ||| ||||| |||||||||||||||| |||||| |||| | Sbjct 1426 CTGGATGGAACCATCCTCGGCGATAATACGGTTCTTCATGGCCTCAGACCACAAGCCAAG 1485 Query 31097 AGCGATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAG 31150 | | || || | | || | |||||| || ||||||| ||||| || Sbjct 1486 CTCTGTCAGATCCCTGAGAAGCCACGGGTTGACGACCTGGAACTCGCCAGCGAG 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921468235613040