Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4985 116 4e-21 seq11228 105 8e-18 seq13121 100 3e-16 >seq4985 Length=7965 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| ||||||||||| || ||||| || Sbjct 7824 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 7883 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || |||||||||||||||||||| |||| ||||||||||| | || | || |||||| Sbjct 7884 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 7943 Query 46499 TCCATGATCTTCTTCTTGA 46517 ||| |||||| ||||| Sbjct 7944 TCCTGGATCTTGGACTTGA 7962 >seq11228 Length=3802 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| || |||||||||||| |||||||| || || || || | Sbjct 362 ACGAAGCACCAAGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCAGACAGTGTCCGGCC 303 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||| ||||| || | || |||||||| | || | || |||||| Sbjct 302 ATCTTCCAACTGCTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGTGGGATGCCCTCCTT 243 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| ||||| ||||| ||| | | | ||||| || || || || | |||| Sbjct 242 GTCCTGAATCTTAGACTTGA-CGTTGTCGATTGTGTCTGATGACTCGACTTCAAGAGTGA 184 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || ||||||| || || |||||||| ||||| Sbjct 183 TCGTCTTTCCCGTCAAGGTCTTGACAAAGATCTGCAT 147 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| ||||| ||||| |||||||| || || || || | || || Sbjct 127 ACCAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCATCCTCA 68 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| ||||||||||| | || | || |||||||||| | Sbjct 67 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGG 8 Query 46505 ATCTT 46509 ||||| Sbjct 7 ATCTT 3 >seq13121 Length=2348 Score = 100 bits (110), Expect = 3e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||||| || || || | || || ||||||||||||||||| | Sbjct 105 CCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 46 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCT 46508 |||| ||||||||||| | || | || |||||||||| ||||| Sbjct 45 TCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565143849746640