Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12282 172 5e-38 seq4985 105 7e-18 seq11228 104 2e-17 seq13121 82.4 8e-11 >seq12282 Length=8984 Score = 172 bits (190), Expect = 5e-38 Identities = 334/483 (69%), Gaps = 14/483 (3%) Strand=Plus/Minus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 |||||||| || || || || || | | || ||| | ||| || || |||||||| Sbjct 8044 TTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTT 7985 Query 132685 GCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | || ||||| ||| |||| ||| |||| || || | |||||| || ||| Sbjct 7984 GATGACTTGTAAACCTTCTCATTGCC---CAGAGCGACCAGTAGACGGTCGGCAACAAAC 7928 Query 132742 TCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCA-GACGCACCGGCAGCGCTTC 132800 |||||||| || |||| | | | || | || || | | |||| ||||| || || Sbjct 7927 TCGATGTACTGTTTCATGAGGTTGGAGTTCATGCCGAGGAGGGCGCA-TGGCAGAGCCTC 7869 Query 132801 GGT-GAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 ||| |||| | || ||||||||| || || ||||||| ||| ||| ||| ||| Sbjct 7868 GGTCAAGAACTCCTT-CTCGATGGCAACAGCCTCGGTGATGATATCCTCAACACGCTGTT 7810 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 |||||| || | | || || ||||| | ||||| |||||| |||| |||| Sbjct 7809 TGCTCGGACGATTCCTCAGGTGAGAGAACAGGAGACAAGCGAAGTCGGTGTGCAGACCCT 7750 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 | || | ||||| || |||||| ||| |||| ||| |||||||| ||||| || |||| Sbjct 7749 CATCACGAGAAATTAGCTCGTTGGAGAAGGTCAGGCCAGGCATGAGACCGCGCTTCTTGA 7690 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| |||||| ||| ||||||| |||||| ||||| ||||| || | Sbjct 7689 GCCAGAAAATGGAGGCGAATGCGCCGCTGAAGAAGATGCCCTCCACGGCAGCGAAGGCAA 7630 Query 133040 CCAGGCGCTCGCCGAACGTGG-CT-TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGC 133097 |||| |||| | | | |||| || | | ||| |||||| ||| ||||| ||||| Sbjct 7629 CCAGTCGCTGGGCATAGGTGGACTCGCGGTCCTG--GATCCACTTCAGAGCCCAGTCGGC 7572 Query 133098 CTT 133100 ||| Sbjct 7571 CTT 7569 Score = 149 bits (164), Expect = 6e-31 Identities = 199/276 (72%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||||||||| ||| ||| | || ||||| | ||||||||| ||| || || Sbjct 7444 GTAGGTGTCGATGAGCAGCGAGTACGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 7385 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || ||||| | ||| || || ||| ||||| ||||| || Sbjct 7384 TCCGTAGAAGCAACGAGCCTCTGGGATCTGAACCTCGCCGCTGAAGCGCTCCACCAGGTT 7325 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||| || || || ||||| ||||| || | ||| |||||| | || Sbjct 7324 CTCGTTGACGATTCCATCCGAAGCAGCGAAGAAGGCGAGGATGTGGGAGATGAAGTATCG 7265 Query 133347 CTCGTTGTCGTTCAAGCGCT---CCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| |||| ||| ||| | ||||||| || |||||||||| || || | |||||| Sbjct 7264 CTCGTCGTCGGTCAGGCGGTTGCTCCAGTCGTGCATGTCCTTGGAGAGATCAATCTCCTC 7205 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| ||||| || || || |||||||| Sbjct 7204 AGCAGTCCAGAACGAAGCTTCATGCTTCTTGTACAT 7169 >seq4985 Length=7965 Score = 105 bits (116), Expect = 7e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || |||||| | ||||| ||||| || || | ||| ||||| Sbjct 7954 AAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAGCGTCTGATCTTCGCCGGCAAG 7895 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||||||| ||||||||||||||| ||||| | || || || Sbjct 7894 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 7835 Query 38448 TTGGTGCTGCG 38458 |||||||||| Sbjct 7834 CTGGTGCTGCG 7824 >seq11228 Length=3802 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || || ||||| | || |||||| | | Sbjct 147 ATGCAGATCTTTGTCAAGACCTTGACGGGAAAGACGATCACTCTTGAAGTCGAGTCATCA 206 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || || | ||||| ||||| || || | ||||| Sbjct 207 GACACAATCGACAACG-TCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCACCAGACCA 265 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || |||| ||| ||||| ||| |||| || | || || || |||||||| Sbjct 266 GCAACGTCTTATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACACTGTCTGACTACAA 325 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||||| |||||||||| |||||||| ||| || | || ||| Sbjct 326 CATCCAAAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTGCGGGGTGGC 374 >seq13121 Length=2348 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||| ||||| |||||| | ||||| ||||| | || | ||| ||||| ||| Sbjct 3 ATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 62 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 || || || | || |||||| ||||||||||||||| |||| Sbjct 63 CTTGAGGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGG 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500089133594880