Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq7991 259 9e-64 seq12282 149 1e-30 >seq7991 Length=9451 Score = 259 bits (286), Expect = 9e-64 Identities = 841/1280 (66%), Gaps = 51/1280 (4%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || || ||||| |||||||||||||| |||||| ||| || || ||| | ||||| || Sbjct 1805 GTGAGAGCAGCATGGTAGATGGTCTCGAAGATCTGCTTATTTAG-CTCGCGAGCCTCTGG 1863 Query 221476 AGAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACC 221535 ||| ||| ||||| || || | || |||| || || ||||| || |||| ||| Sbjct 1864 AGAGTCGAAAGGCATGCGAAGGGCCAAGAATGCGTCAGCAAGACCCTGAACACCGACACC 1923 Query 221536 GATGGGCCTGTGTCTCCTGTTGGA---AGCGGCCGCTTCTGGCACGGGATAAAAGTTGAC 221592 || |||| ||||| | ||||| | |||| | | || || ||||| ||||| Sbjct 1924 AATAGGCCGGTGTCGCATGTTGCTGTTATAGGCCTCCT-TG--ACCGGATAGTGATTGAC 1980 Query 221593 GTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 || || | ||||| ||||| | |||||| | |||||| || || |||| Sbjct 1981 ATCAATGATCTTGTTCAGGTTGCGGACGATGACCTGGGTAACCTCGTGCAACTGCTGGAA 2040 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 ||| | || | | ||||| | || || | || ||| |||| | Sbjct 2041 GTTGTAG--CAGTT----GTTGTCGTAG------TCAACGTATGCAGGTAGAGCAATGGA 2088 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTA-TACTGTATGATCTCTGTACAGA 221771 ||||| ||| |||||||| ||||||||| || | |||| ||||||||||| |||| Sbjct 2089 GGCCAAGTTGCACACGGCGACCTCGTCCG-GTGCACAGTACTCGATGATCTCTGTGCAGA 2147 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCT 221831 ||||| || ||||| ||||||| || || || |||||| || || ||||| Sbjct 2148 GGTTGGAGCTTCGAATGGTACCCAGGTTCTTCTGGTTGCTCTTGCGGTTTGCGTGGTCCT 2207 Query 221832 TGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTT 221891 | || ||||| ||||| ||||||||| |||||| | ||||| | ||| || | Sbjct 2208 TATACAGCATGAAGGGGTTGCCAGTCTCGGTCTGAGCTTCGAGAATAGCATACCACAGCT 2267 Query 221892 CTCTGGCGCT-CACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATAC--CCGGTATAGA 221948 ||||| || || ||| | || ||||| ||| || ||| | ||| ||| Sbjct 2268 -TCTGGGCCTTCATGGTCTTGCGACCTCGGCCCTC---CTTCTCGTACTGCTCGTAGAGA 2323 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || | | |||| || ||||| ||| | ||||| |||||| | |||||||||| Sbjct 2324 GCCT--CGAACTCATCGCCGTAGCAGTCGGCGAGGCCAGGACACTCGTTAGGACACATCA 2381 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||||| ||| | | ||||| || |||||| || || |||||||| || || Sbjct 2382 GGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAAAAGATCGGGGATCCAGAGGGCAA 2441 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 | || ||||| | || || ||||||| ||||| ||| || | ||| || | |||| Sbjct 2442 GGAAAAGATCACGGGCTCGGATCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACT 2501 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | ||||||||||| ||||| || |||| || | ||| || || ||||| |||| Sbjct 2502 CAAAGACATCAGCGTGCCATGGCTCAAGGTAGATAGCAAAAGCACCAGGACGCTTATTGC 2561 Query 222189 CACCCTGATCCAC-CATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCC 222246 | |||||||| || ||| | | | |||||||| || || | ||| | || Sbjct 2562 CGCCCTGATCGACGTATC--GGGCGGTGTTGTTGAAGACCCGCAGCATTGGTGTGATGCC 2619 Query 222247 GTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCA- 222304 || ||| ||||| ||||| ||||| | ||| ||| | || | | | ||| Sbjct 2620 ATTAGATGTGCCGTTAGTGCCAGCGATGTATGAGCCGGTGGCAC---GGATGCGGTGCAC 2676 Query 222305 -GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 || ||||||||||| || || |||||||| || || ||||||| ||||| Sbjct 2677 GTTCAGACCGATACCACCCGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTGTCGTA 2736 Query 222364 GATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTT 222423 |||||||| || ||||||||| | || | || || || || |||| ||| | | Sbjct 2737 AATGCCCTCGATGCTGTCCTCCTTCATGTCGACAAGGAAGCATGATGACAACTGGGGCTG 2796 Query 222424 GGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAG 222483 | | | || || |||| ||||| ||| ||||| ||| | | |||||||| Sbjct 2797 AGGCGTGCCAGCATTGAACAAAGTGGGCGAGGCATGTGTGAAGAACTTATTTGACATCAG 2856 Query 222484 ATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATCTCA 222542 | ||| ||||| | ||| || ||| | ||| ||| || | | | ||| | || Sbjct 2857 GTTGTAGGTCTCGATGACCCTCTCGACATCGTCTCCCCAGATACCG-ACAGCGACACGCA 2915 Query 222543 TGTACATGTACTGGGGCCTCTCCACAGGAC----CCTTGGAGCTGGAGAGCAGGTACGAT 222598 || ||||| || || | ||| ||| || || | ||||| ||| |||||||| Sbjct 2916 TGATCATGTGTTGTGGTCGCTCAACA--ACTTTACCATCGAGCT--TGAGGAGGTACGAG 2971 Query 222599 TTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGCG 222658 || || |||||||| || ||||| | | | ||||| | | ||| || | ||| Sbjct 2972 CGCTCGAGGGTCTTGAAGCCGAAGTATTGGTAACCGAAGTCACGGTCGTAGACAATGGCT 3031 Query 222659 GCGTCCAGCTCCGACTTGTG 222678 | ||| | |||| |||||| Sbjct 3032 GAGTCAAACTCCTCCTTGTG 3051 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | |||||| | | |||||| | ||| || ||| | || Sbjct 1513 GTTGACGACCTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGG 1572 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||| ||||| ||||||||||| | ||| || |||||||| ||||||| Sbjct 1573 CTCGAAGCACTCATTGTTACCCAGGATCTGCGACGTCGAAGCAGTGGGCATTGGTGCCAG 1632 Query 221236 CAGCAGACTGTTGCG 221250 || || ||||||||| Sbjct 1633 CAACAAACTGTTGCG 1647 >seq12282 Length=8984 Score = 149 bits (164), Expect = 1e-30 Identities = 341/517 (66%), Gaps = 13/517 (3%) Strand=Plus/Plus Query 25810 CCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCA-GAGCGCTAC 25868 ||| ||||| | |||||| ||||| ||||||||||| | || ||| | || Sbjct 7554 CCCTGCATCCGCAAGAAGGCCGACTGGGCTCTGAAGTGGATCCAGGACCGCGAGTCC-AC 7612 Query 25869 GTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT 25928 | || | |||| ||||| ||||| ||||| |||||||||||||| |||||||| | || Sbjct 7613 CTATGCCCAGCGACTGGTTGCCTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGCGCATT 7672 Query 25929 TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGA 25988 || |||| |||||||||||| || || |||||| || ||| ||| |||||||| Sbjct 7673 CGCCTCCATTTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCTGACCTTCTCCAACGA 7732 Query 25989 GCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCA 26048 ||| || | || |||||||| |||| || || || || || || | | | || Sbjct 7733 GCTAATTTCTCGTGATGAGGGTCTGCACACCGACTTCGCTTGTCTCCTGTTCTC---TCA 7789 Query 26049 CTTGCTCCACAAACCTTCTCA--AGAGACCGTCTACAG--TATCATCAAAGAGGCTGTGG 26104 | || | || | || | | | | ||| | || |||||||| |||||||| | Sbjct 7790 CCTG----AGGAATCGTCCGAGCAAACAGCGTGTTGAGGATATCATCACCGAGGCTGTTG 7845 Query 26105 AGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACA 26164 |||||||||||||| | ||||||||| || Sbjct 7846 CCATCGAGAAGGAGTTCTTGACCGAGGCTCTGCCATGCGCCCTCCTCGGCATGAACTCCA 7905 Query 26165 GACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCG 26224 ||||||| || ||||| |||| ||| ||||||| ||| ||| | ||||| | Sbjct 7906 ACCTCATGAAACAGTACATCGAGTTTGTTGCCGACCGTCTACTGGTCGCTCTGGGCAATG 7965 Query 26225 CCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGA 26284 | | |||| | | ||||| |||||||| ||||| ||||| || | | || | Sbjct 7966 AGAAGGTTTACAAGTCATCAAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGTGGCA 8025 Query 26285 AGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||||||||| ||| | || || ||||| || Sbjct 8026 AGACCAACTTCTTTGAGAAGCGTGTTGGTGACTACCA 8062 Score = 93.3 bits (102), Expect = 8e-14 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 25466 CACACAAAGATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAG 25525 ||||||| | || ||| |||||||||||||| | || || |||||| || || | Sbjct 7150 CACACAAT-AGATCTGGCAGATGTACAAGAAGCATGAAGCTTCGTTCTGGACTGCTGAGG 7208 Query 25526 AGATTGATCTGGCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGC 25582 |||||||||| ||||||||||| ||| |||| || || || | ||||||| Sbjct 7209 AGATTGATCTCTCCAAGGACATGCACGACTGGAGCAACCGCCTGACCGACGACGAGCGAT 7268 Query 25583 ATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATC 25642 | || || || | | || ||||| || || || ||||| || || |||||||| | Sbjct 7269 ACTTCATCTCCCACATCCTCGCCTTCTTCGCTGCTTCGGATGGAATCGTCAACGAGAACC 7328 Query 25643 TGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCC 25702 || ||| | |||| | | || || ||| | ||||| || |||||||| |||| Sbjct 7329 TGGTGGAGCGCTTCAGCGGCGAGGTTCAGATCCCAGAGGCTCGTTGCTTCTACGGATTCC 7388 Query 25703 AGAT 25706 |||| Sbjct 7389 AGAT 7392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928689427486080