Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1846 178 2e-38 seq12282 132 6e-25 seq7991 132 6e-25 seq10567 125 9e-23 seq11161 100 3e-15 seq7945 96.9 4e-14 seq6794 93.3 5e-13 seq4356 89.7 6e-12 >seq1846 Length=19237 Score = 178 bits (196), Expect = 2e-38 Identities = 279/395 (71%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 1573911 GGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGGCGCGGCCGCCGACGAG 1573970 || |||||||| ||| | || |||||||| || |||||| ||| | | ||| Sbjct 5299 GGAAAGACCACCAGCGTACTCTGCCTGGCGCGCCAGCTGCTGGGCGACGCCTACAAGGAG 5358 Query 1573971 GCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATCATC 1574030 || ||||| || |||||||| ||||||||||| || |||| || ||||| || ||| Sbjct 5359 GCGGTGCTGGAGCTCAACGCCTCGGACGAGCGAGGAATCGATGTGGTGCGGAACCGGATC 5418 Query 1574031 AAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTC 1574090 ||| | ||| |||| | || |||||| | || ||||||||| | ||||||| Sbjct 5419 AAGGGCTTCGCGCAGAAGAAGGTCACGCTGCCGGCGGGCCGCCACAAGATCGTCATCCTG 5478 Query 1574091 GACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAG 1574150 |||||||||||| || | ||||||| || |||||||| ||| || || ||||| | Sbjct 5479 GACGAGGCCGACAGCATGACGTCGGGCGCGCAGCAGGCGCTGAGGCGGACGATGGAGATT 5538 Query 1574151 CACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCC 1574210 || ||||||||||||| |||||| | ||||||||| ||| | | |||||||| | Sbjct 5539 TACTCCAACACGACGCGGTTTGCCTTCGCGTGCAACCAGTCCAACAAGATCATCGAGCCG 5598 Query 1574211 CTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCCCAGATACGCG 1574268 || | |||||| || || || ||||| | | ||| ||| |||| |||| | | Sbjct 5599 CTGC--AGTCGCGGTGTGCGATCCTGCGGTACGCGCGGCTGACGGACGGCCAGGTGGTCA 5656 Query 1574269 CGCGCCT-ATGCGATATTGTCGCCGCCGAAAAGGT 1574302 |||||| |||| | || ||| ||||| || || Sbjct 5657 AGCGCCTGATGC-AAATCATCGAGGCCGAGAAAGT 5690 >seq12282 Length=8984 Score = 132 bits (146), Expect = 6e-25 Identities = 177/244 (73%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| ||| || |||||||||||||| |||| ||||| Sbjct 8068 GCCTTCTGGTAGTCACCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCGAGAGAGATG 8009 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||| | | |||||| ||| || || ||||||| Sbjct 8008 TTCTCCATGAAGTCGAAGGGGTTTGATGACTTGTAAACCTTCTCATTGCCCAGAGCGACC 7949 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || |||||||| ||||||||||||||||| ||||||| || ||||||||||| Sbjct 7948 --AGTAGACGGTCGGCAACAAACTCGATGTACTGTTTCATGAGGTTGGAGTTCATGCCGA 7891 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 ||| || ||||| | |||| ||| ||||| |||||||| | || |||||| || Sbjct 7890 GGAGGGCGCATGGCAGAGCCTCGGTCAAGAACTCCTTCTCGATGGCAACAGCCTCGGTGA 7831 Query 868929 TGAT 868932 |||| Sbjct 7830 TGAT 7827 Score = 113 bits (124), Expect = 6e-19 Identities = 129/173 (75%), Gaps = 9/173 (5%) Strand=Plus/Minus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| ||||| |||||||| ||||||||||||||||| || |||| | | Sbjct 7732 TCGTTGGAGAAGGTCAGGCCAGGCATGAGACCGCGCTTCTTGAGCCAGAAAATGGAGGCG 7673 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 || ||| ||| ||||||||||| ||||| || ||| | | || |||| |||| || Sbjct 7672 AATGCGCCGCTGAAGAAGATGCCCTCCACGGCAGCGAAGGCAACCAGTCGCTGGGCATAG 7613 Query 869321 GTG---TCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTT 869370 ||| ||| || || | ||||||||||| |||||||||||||| || Sbjct 7612 GTGGACTCGCGGTCC------TGGATCCACTTCAGAGCCCAGTCGGCCTTCTT 7566 Score = 91.5 bits (100), Expect = 2e-12 Identities = 172/251 (69%), Gaps = 3/251 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||| ||||| ||| | |||||| | || Sbjct 7413 GAGTGGATGTTCTCCATCATGATCTGGAATCCGTAGAAGCAACGAGCCTCTGGGATCTGA 7354 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||| || | ||||||||||| ||||| || || || ||||| Sbjct 7353 ACCTCGCCGCTGAAGCGCTCCACCAGGTTCTCGTTGACGATTCCATCCGAAGCAGCGAAG 7294 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTGG 869809 || || |||| ||| ||| |||| |||||||||||| | | ||| ||||| | Sbjct 7293 AAGGCGAGGATGTGGGAGATGAAGTATCGCTCGTCGTCGGTCAGGCGGTTGCTCCAGTCG 7234 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 |||| | ||| || | |||||| || ||||||| ||| || || ||| ||| Sbjct 7233 TGCATGTCCTTGGAGAGATCAATCTCCTCAGCAGTCCAGAACGAAGCTTCATGCTTCTTG 7174 Query 869870 TACATCTCCCA 869880 ||||||| ||| Sbjct 7173 TACATCTGCCA 7163 >seq7991 Length=9451 Score = 132 bits (146), Expect = 6e-25 Identities = 198/281 (70%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||| |||||||| || || |||| ||| ||||| || ||||| || || ||| || Sbjct 2563 GCCCTGATCGACGTATCGGGCGGTGTTGTTGAAGACCCGCAGCATTGGTGTGATGCCATT 2622 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || |||||| ||||| || | ||| | ||||| ||| || | |||| || | Sbjct 2623 AGATGTGCCGTTAGTGCCAGCGATGTATGAGCCGGTGGCACGGATGCGGTGCACGTTCAG 2682 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||||| || || ||| ||||||||| | || || ||||| |||||||| ||||| Sbjct 2683 ACCGATACCACCCGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTGTCGTAAATGCC 2742 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGT 1630301 |||||| ||| |||||||||| || || ||||| || || || || || | ||| Sbjct 2743 CTCGATGCTGTCCTCCTTCATGTCGACAAGGAAGCATGATGACAACTGGGGCTGAGGCGT 2802 Query 1630302 GCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACT 1630342 ||| || ||||| | ||||||| || ||||| |||| Sbjct 2803 GCCAGCATTGAACAAAGTGGGCGAGGCATGTGTGAAGAACT 2843 >seq10567 Length=8101 Score = 125 bits (138), Expect = 9e-23 Identities = 104/127 (82%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||| ||| | || || || ||||||||| | || |||||| | ||||| ||| |||| Sbjct 6614 CTCTTCGAGATCATTCTTGCTGCCAACTACATGGATATCAAGGCGCTGCTTGATGTTGGT 6555 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | || |||||||||||||||||||| || || |||||||| |||||||| || Sbjct 6554 TGCAAGACAGTAGCCAACATGATCAAGGGCAAATCCCCTGAGGAGATTCGCAAGACGTTC 6495 Query 1592288 AACATCA 1592294 ||||||| Sbjct 6494 AACATCA 6488 >seq11161 Length=8539 Score = 100 bits (110), Expect = 3e-15 Identities = 139/190 (73%), Gaps = 5/190 (3%) Strand=Plus/Minus Query 1726966 GTCGAGGTCGGGGTCGCTGGCCAGGCCCTTCCACCCGACGGTCGTGCGCGGCTTTTCGAC 1727025 ||||| ||| |||||| || ||||||||||||| |||||||| || || ||||| |||| Sbjct 5334 GTCGACGTCCGGGTCGTTGACCAGGCCCTTCCAGCCGACGGTGGTTCGGGGCTTCTCGAG 5275 Query 1727026 ATAGGCGCGCATGACCACGCAAAGCGCGTCGCCGACCTCGTCTCGGACAAAGGCGCGCAG 1727085 ||||||||||||| ||||| || || || ||| | | ||||||| | | | || Sbjct 5274 GTAGGCGCGCATGATGACGCAGAGTTCGCCG--GACAGCTTGTCGGACAGCGCCTTG-AG 5218 Query 1727086 GC-GTCGGCCATAGTCGACGACGGCCGCCGGGTCGTGCGCCGAACACGGACCAACGATAA 1727144 | ||| | | || |||| | ||| ||||||||||| || || || || |||| | Sbjct 5217 CCTGTCAG-CGTACTCGAGGGCGGTGGCCGGGTCGTGGATGGAGCAGGGGCCGACGACGA 5159 Query 1727145 CCAGCAGCCG 1727154 | ||||| || Sbjct 5158 CGAGCAGGCG 5149 >seq7945 Length=2812 Score = 96.9 bits (106), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 18358 CCGCGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCG 18417 ||||| ||||| |||||||||| || ||| | | ||||| || | |||||| || || Sbjct 922 CCGCGCCCCTCGCACGCCGACTGGACTTACCTTGAGAAGTATGGTACCAAGGCCTCCTCT 981 Query 18418 GGCGGAGGCCGGTCGTCTGCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCC 18477 || || |||||| ||||||||||| | ||||||||||||||||| || ||| Sbjct 982 GGGGGCGGCCGGAGCAGCGCCCGCGAGACTATTGGCCGCGTCGCCGCCGGCGCTGTTGCC 1041 Query 18478 GAGAAATGGCT 18488 ||||||||||| Sbjct 1042 GAGAAATGGCT 1052 Score = 86.0 bits (94), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 ||||||||||||||||||||||||||| | ||||| || |||||||| || |||| Sbjct 1345 GGCCTCGGCGAGCCGTGCTTTGACAAGCTTGAGGCTCTCCTTGCCCACGCTATTATGTCT 1404 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGC 19184 || || || || ||||| || ||||||||| Sbjct 1405 ATTCCTGCTACTAAGGGCTTTGAGATTGGC 1434 >seq6794 Length=11376 Score = 93.3 bits (102), Expect = 5e-13 Identities = 191/280 (68%), Gaps = 7/280 (3%) Strand=Plus/Plus Query 1852040 AGGCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGC 1852099 ||| ||||||||||| | |||||||| ||||||||||| || ||||| || Sbjct 10856 AGGTCGATCTTGGAGTTTGGGTCGCTGGCCGACATCTTGCCGCCCTGC---AGGCCGGGG 10912 Query 1852100 ACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGC 1852159 || | ||||| | | ||| |||| || || || || ||||| || Sbjct 10913 ACCATGGGGTTCATGATGTGCGCCCGCTGCCTGTATCCCAGCTTGGGCAGCCACTCCTTT 10972 Query 1852160 GCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGC 1852219 || || || | |||||||||||| ||||||||||| |||| ||||| |||| | Sbjct 10973 GCGGCGGTGAAGAGCTTGCGCTGGTCCACGCCGCCAAACTGCACGTCCACGTCCAGGTAC 11032 Query 1852220 TGCTCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTT-GCGGTC 1852278 |||||||| ||| |||||| || ||||| |||| | ||| | | ||| || || Sbjct 11033 TGCTCGTCCAGGACCTGCAGGATGGGGTACAGCAGCCCGGACAGCGGGGCGTTGGCCGT- 11091 Query 1852279 CATCTTGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGC 1852316 | |||||| |||| |||| |||||| || ||| ||||| Sbjct 11092 CTGCTTGACGACCTCAGCGCCGGCCTTCTTGGCGTCGTGC 11131 >seq4356 Length=17895 Score = 89.7 bits (98), Expect = 6e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 1254437 GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGA 1254496 |||||||||| | | ||| |||| ||||||||||| |||||||||| || ||||| | Sbjct 8447 GGCCTCGGTGGCAACGCGCTCGAAGATGTCGTTGACGAACGAGTTCAGGATGGACATGGC 8506 Query 1254497 CTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1254538 ||||||||| || ||||||||| ||||||||||| || Sbjct 8507 ACGGTTGGAGATACCAGTGTCGGGGTGGACCTGCTTGAGGAC 8548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106041010412094