Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1846 176 6e-38 seq12282 152 7e-31 seq7991 114 2e-19 >seq1846 Length=19237 Score = 176 bits (194), Expect = 6e-38 Identities = 249/350 (71%), Gaps = 0/350 (0%) Strand=Plus/Minus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 ||| |||| || || ||| | | |||||||| ||||| || |||||| | ||||||| Sbjct 5648 TGGCCGTCCGTCAGCCGCGCGTACCGCAGGATCGCACACCGCGACTGCAGCGGCTCGATG 5589 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | | ||| |||||| || | ||||||||||||||| |||| | | ||||| Sbjct 5588 ATCTTGTTGGACTGGTTGCACGCGAAGGCAAACCGCGTCGTGTTGGAGTAAATCTCCATC 5529 Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031 ||| || || ||||| || || ||| ||| | || |||||||||||| ||||||| | Sbjct 5528 GTCCGCCTCAGCGCCTGCTGCGCGCCCGACGTCATGCTGTCGGCCTCGTCCAGGATGACG 5469 Query 333032 ATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTG 333091 ||||||||||| || |||||| ||| | ||| ||| | ||||| || Sbjct 5468 ATCTTGTGGCGGCCCGCCGGCAGCGTGACCTTCTTCTGCGCGAAGCCCTTGATCCGGTTC 5409 Query 333092 CGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCG 333151 ||||| || || | || ||||||||||| |||||||| || ||||| ||||| | | | Sbjct 5408 CGCACCACATCGATTCCTCGCTCGTCCGAGGCGTTGAGCTCCAGCACCGCCTCCTTGTAG 5349 Query 333152 GCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCC 333201 || | |||| || |||||||||||| | ||| |||||||| || Sbjct 5348 GCGTCGCCCAGCAGCTGGCGCGCCAGGCAGAGTACGCTGGTGGTCTTTCC 5299 >seq12282 Length=8984 Score = 152 bits (168), Expect = 7e-31 Identities = 216/299 (72%), Gaps = 5/299 (2%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||| || || || || ||||| || |||||| | || | Sbjct 7159 GATCTGGCAGATGTAC-AAGAAGCATGAAGCTTCGTTCTGGACTGCTGAGGAGATTGATC 7217 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 || | |||| | | ||||| ||| ||| |||||||||||| | |||||| Sbjct 7218 TCTCCAAGGACATGCACGACTGGAGCAACCGCCTGACCGACGACGAGCGATACTTCATCT 7277 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||| |||||||||| || ||| || ||||| ||||| ||||||||||| | Sbjct 7278 CCCACATCCTCGCCTTCTT-CGCTGCTTCGGATGGAATCGTCAACGAGAACCTGGTGGAG 7336 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| | ||||| || | |||||||| |||| || ||||| ||||||||| Sbjct 7337 CGCTTCAGCGGCGAGGTTCAGATCCCAGAGGCTCGTTGCTTCTACGGATTCCAGATCATG 7396 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || || ||||||||||| || || |||||||| || |||||||||||| ||||||| || Sbjct 7397 ATGGAGAACATCCACTCCGAGACGTACTCGCTGCTCATCGACACCTACATCAAGGAGCC 7455 Score = 109 bits (120), Expect = 8e-18 Identities = 179/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| |||||| || | |||||||| ||||| | | |||| | ||||| || Sbjct 7827 ATCATCACCGAGGCTGTTGCCATCGAGAAGGAGTTCTTGACCGAGGCTCTGCCATGCGCC 7886 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 ||| ||||||||||| ||| | |||||| |||||||| | | ||||| |||||||| | Sbjct 7887 CTCCTCGGCATGAACTCCAAC-CTCATGAAACAGTACATCG-AGTTTGTTGCCGACCGTC 7944 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | || | || || ||| |||||| ||| | | | ||||| ||| | ||| Sbjct 7945 TACTGGTCGCTCTGGGC-AATGAGAAGGTTTACAAGTCATCAAACCCCTTCGACTTCATG 8003 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| ||||| |||| |||||||||||||| || ||| || | ||| || ||| Sbjct 8004 GAGAACATCTCTCTCGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGGTGACTACCAG 8063 Query 1456762 AAGGCCGGCGTCA 1456774 |||||||| |||| Sbjct 8064 AAGGCCGGTGTCA 8076 Score = 95.1 bits (104), Expect = 2e-13 Identities = 117/156 (75%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCC--TCGACACTTTGCCGA 1456180 || |||||||||||||| ||||||||||| | ||| || || || || |||| | Sbjct 7566 AAGAAGGCCGACTGGGCTCTGAAGTGGATCCA---GGACCGCGAGTCCAC-CTATGCCCA 7621 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 ||| || || | ||| || || || ||||||||||| ||| ||| ||| | |||| Sbjct 7622 GCGACTGGTTGCCTTCGCTGCCGTGGAGGGCATCTTCTTCAGCGGCGCATTCGCCTCCAT 7681 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || ||||||||||||||||| |||||||| || || Sbjct 7682 TTTCTGGCTCAAGAAGCGCGGTCTCATGCCTGGCCT 7717 >seq7991 Length=9451 Score = 114 bits (126), Expect = 2e-19 Identities = 194/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 259905 AGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATT 259964 |||| ||||| || ||||||| | || ||||| |||||||| | || ||| | Sbjct 2843 AGTTCTTCACACATGCCTCGCCCACTTTGTTCAATGCTGGCACGCCTCAGCCCCAGTTGT 2784 Query 259965 CGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCA 260024 | || ||||| || | |||||||||| || ||||||||||| || ||||| |||| Sbjct 2783 CATCATGCTTCCTTGTCGACATGAAGGAGGACAGCATCGAGGGCATTTACGACACCCTCA 2724 Query 260025 AGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGC 260084 || || || | ||||||||| ||| || || |||||| | || ||| | | Sbjct 2723 AGACTTGTGCTATGATCTCCAAGATGGCGGGTGGTATCGGTCTGAACGTGCACCGCATCC 2664 Query 260085 GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGC 260144 | ||| | ||| | ||| | || ||||| |||||| || || ||| | || |||| Sbjct 2663 GTGCCACCGGCTCATACATCGCTGGCACTAACGGCACATCTAATGGCATCACACCAATGC 2604 Query 260145 TTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | || || || ||| |||| || || |||||||| ||| || Sbjct 2603 TGCGGGTCTTCAACAACACCGCCCGATACGTCGATCAGGGC 2563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176520481503884