Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7991 259 5e-64 seq11228 152 6e-32 seq8642 131 2e-25 seq4985 116 4e-21 seq13121 91.5 2e-13 >seq7991 Length=9451 Score = 259 bits (286), Expect = 5e-64 Identities = 921/1417 (65%), Gaps = 48/1417 (3%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || ||||| || ||| | || | ||| | ||||| ||||| || ||| Sbjct 1526 AACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCA 1585 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || |||||||| | ||| || || ||||| || | | ||||| || Sbjct 1586 TTGTTACCCAGGATCTGCGACGTCGAAGCAGTGGGCATTGGTGCCAGCAACAAACTGTTG 1645 Query 80476 CGCAGGCCGTGCTTCTTGATAT---CCTCGCGCAAATCTGA---CCAAAAATCAACCCCA 80529 || | || || |||||| | ||| | || ||| | ||||| || | Sbjct 1646 CGTACACCAGTCTCCTTGATCTTGTCCTTGAGCGCATCCCAGTCCCAAAGGTCGG----A 1701 Query 80530 ACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGA 80587 | ||| |||| ||||||||| ||||| |||||||| || | || ||| || Sbjct 1702 AGGCT-TGACATTCCACATGTCAAACTGCAGGATGCCCTGTGAGACTGGGCTGCCCTCGT 1760 Query 80588 ACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGAT 80647 | |||| ||| ||||||||| |||||| | |||| || | | || || || || | Sbjct 1761 ATGTCTTGTATGGGCCCTCCACCTTGGCAATATCACTTGATGCAGTGAGAGCAGCATGGT 1820 Query 80648 AAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGC 80707 | ||| ||| |||| ||| || | |||| |||| ||| |||||| | || || Sbjct 1821 AGATGGTCTCGAAGATCTGCTTATTTAGCTCGCGAGCCTCTGGAGAGTCGAAAGGCATGC 1880 Query 80708 CCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCT 80767 | || ||| ||||||| || |||||||| |||| | || || ||||| ||| Sbjct 1881 GAAGGGCCAAGAATGCGTCAGCAAGACCCTGAACACCGACACCAATAGGCCGGTGTCGCA 1940 Query 80768 TGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATT---ATCGATGACGCGGTTCA 80824 |||| | ||||||| | || || || ||| ||| |||| ||||| Sbjct 1941 TGTTGCTGTTATAGGCCTCCTTGACCGGATA---GTGATTGACATCAATGATCTTGTTCA 1997 Query 80825 GGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAAT---TGGTTCC 80881 ||||||| | ||| | ||||| || || | | ||| |||| | | | ||| Sbjct 1998 GGTTGCGGACGATGACCTGGGTAACCTCGTGCAACTGCTGGAAGTTGTAGCAGTTGTTGT 2057 Query 80882 CCTTCACAA---ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG 80938 | | ||| |||| || || | ||| |||| ||||||||||| ||||| || | Sbjct 2058 CGTAGTCAACGTATGCAGGTAGAGCAATGGAGGCCAAGTTGCACACGGCGACCTCGTCCG 2117 Query 80939 ---CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTT--AATTGTACCCAG 80993 || | ||| ||||| ||| || ||||| | || || ||| ||| |||||||| Sbjct 2118 GTGCA-CAGTA--CTCGATGATCTCTGTGCAGAGGTTGGAG--CTTCGAATGGTACCCAG 2172 Query 80994 GTTTTTCTGGTTTGACTTGGCGTT-GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGG 81052 ||| |||||||| |||| ||| || | |||||| || |||| | ||| | || | Sbjct 2173 GTTCTTCTGGTTGCTCTTGCGGTTTGCGTG-GTCCTTATACAGCATGAAGGGGTTGCCAG 2231 Query 81053 TCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGA 81112 ||||| ||| | | ||| || || | ||| | || | ||||| | |||||| Sbjct 2232 TCTCGGTCTGAGCTTCGAGAATAGCATACCACAGCTTCTGGGCCTTCATGGTCTTGCGAC 2291 Query 81113 ATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCA 81171 | ||| || | | |||| |||| | ||||||| | |||| | ||| | Sbjct 2292 CTCGGCCCTCCTTCTCGTACTGCTCGTAGAGAGCCTCGAACTCATCGCCGTAGCAGT-CG 2350 Query 81172 GTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCC 81231 | |||| | || ||||||||||| ||||||||| |||||| || ||||| || | Sbjct 2351 GCGAGGCCAGGACACTCGTTAGGACACATCAGGGTCCAGTCACCGTTCTTCTCGACCCGC 2410 Query 81232 TTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCA 81291 ||||||||| || |||||||||||||| ||| || || ||| || |||||| Sbjct 2411 TTCATGAAAAGATCGGGGATCCAGAGGGCAAGGAAAAGATCACGGGCTCGGATCTCCTCC 2470 Query 81292 TCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGA 81351 | || ||||| ||||| || || || || | || || || ||||||||||| || Sbjct 2471 TTGCCGTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCAGCGTGCCATGGCTCAAGG 2530 Query 81352 TACACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCG 81408 || | || | | || || | ||| ||||| | |||||| ||||| || | Sbjct 2531 TAGATAGCAAAAGCACCAGGACGCTTATTGCCGCCCTGATCGACGTATCGGGCGGTGTTG 2590 Query 81409 TTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGC 81468 || || || |||| ||| || |||| |||| || ||||| || || |||| Sbjct 2591 TTGAAGACCCGCAGCATTGGTGTGATGCCATTAGATGTGCCGTTAGTGCCAGCGATGTAT 2650 Query 81469 GACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAA 81526 || || |||| || | | ||| || |||||||| ||||| | | ||| || | Sbjct 2651 GAGCCGGTGGCACGGATGCGGTGCACGTT--CAGACCGATACCACCCGCCATCTTGGAGA 2708 Query 81527 TCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAA 81586 || |||||| || | ||| || ||||| ||||||||||| || | |||||||| | Sbjct 2709 TCATAGCACAAGTCTTGAGGGTGTCGTAAATGCCCTCGATGCTGTCCTCCTTCATGTCGA 2768 Query 81587 GCAAGAAACAGCTTGACATCTGAGGGCT-TTTTGAGCCGGCATTGAACAGTGTTGGGGTC 81645 | ||| || ||||| ||| ||||| | ||| |||||||||| || || | Sbjct 2769 CAAGGAAGCATGATGACAACTG-GGGCTGAGGCGTGCCAGCATTGAACAAAGTGGGCGAG 2827 Query 81646 GCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCG 81705 || || |||| | ||||||||||||| ||||| || |||| | | |||| Sbjct 2828 GCATGTGTGAAGAACTTATTTGACATCAGGTTGTAGGTCTCGATGACCCTCTCGACATCG 2887 Query 81706 TCACCGTGAATACCGATAGCTACACGCATAAACATGT 81742 || || ||||||| ||| |||||||| | ||||| Sbjct 2888 TCTCCCCAGATACCGACAGCGACACGCATGATCATGT 2924 >seq11228 Length=3802 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | || || ||||| || |||||||| || |||||| Sbjct 147 ATGCAGATCTTTGTCAAGACCTTGACGGGAAAGACGATCACTCTTGAAGTCGAGTCATCA 206 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| |||| ||||||||||||||||| || || ||||||||| Sbjct 207 GACACAATCGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAG 266 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||| ||||| | || |||| || || || | ||||| || Sbjct 267 CAACGTCTTATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACACTGTCTGACTACAAC 326 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || || || | || | ||||| || ||||| Sbjct 327 ATCCAAAAGGAGTCGACGCTGCACTTGGTGCTTCGTCTGCGGGGTGG 373 Score = 132 bits (146), Expect = 5e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| |||||||| |||||||||||||| || |||||||| ||| Sbjct 3 AAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGAAAG 62 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || || ||||||| || ||||| | ||||| || |||| |||||||| ||||| || Sbjct 63 CAGCTTGAGGATGGCCGAACCCTCTCGGACTACAACATCCAGAAGGAATCTACTCTCCAC 122 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 123 CTGGTCCTCCGCCTCCGTGGTGG 145 >seq8642 Length=22301 Score = 131 bits (144), Expect = 2e-25 Identities = 210/302 (70%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 31962 GCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGC 32021 |||||||||||| ||| | |||||| | ||||| ||||| ||||| || ||||| Sbjct 4077 GCGGTCCATTCCGTCCGTCGTGGACGGATTAAAGCCGGGTCAGCGAAAGGTCATCTACGC 4018 Query 32022 CTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGC 32081 |||| ||||| ||| || | | |||| |||||| | | || | || || || | Sbjct 4017 CTGCTTCAAGCGCAACTTGACCAAGGACAAGAAGGTCGTTGAATTGGCTGGATATGTCTC 3958 Query 32082 AGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGC 32141 ||||| |||||||| || |||||||| | || | ||| || || | | | || Sbjct 3957 TGAGCAGACGGCCTACCATCACGGCGAAGTTTCCTTACAGCAGACAATCATTGGCTTGGC 3898 Query 32142 TCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGAC 32201 |||||||||||||| | || ||| ||||| | || ||||| || | || || | Sbjct 3897 CCAGAACTTTGTCGGATCGAACAACGTGAACATCCTGGAGCCCAGCGGTAACTTCGGTTC 3838 Query 32202 CCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCACC 32261 || ||||||||||| | ||| | || ||| | ||||||||||| ||||| || | || Sbjct 3837 TCGTCTCGCCGGTGGTAGCGATTCGGCCAGCGCTCGTTACATCTTTACCCGCCTGTCCCC 3778 Query 32262 TT 32263 || Sbjct 3777 TT 3776 >seq4985 Length=7965 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||| | || || ||||||||||| || ||||| ||||||||||||||||| || || || Sbjct 7960 AAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAGCAGCGTCTGATCTTCGCC 7901 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| |||||||| | || ||||| | ||||| || |||| ||||| ||||| Sbjct 7900 GGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACC 7841 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || |||| || || ||||| Sbjct 7840 CTCCACCTGGTGCTGCGCCTGCGTGGTGG 7812 >seq13121 Length=2348 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| ||||| |||||||||||||| | || || || || ||||| Sbjct 3 ATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATTGATCTTCGCCGGCAAGCAG 62 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGG 27595 || ||||||| |||||||| | ||||| || |||| |||| Sbjct 63 CTTGAGGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGG 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570215001327840