Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20helianthi_20[genbank_20GCA_5F001702395.1_202016-08-10] 13,382 sequences; 46,487,794 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq11228 167 5e-36 seq4985 114 3e-20 seq2165 93.3 1e-13 seq13121 87.8 4e-12 >seq11228 Length=3802 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| ||||||||||| || || | || |||| |||||| Sbjct 358 AGCACCAAGTGCAGCGTCGACTCCTTTTGGATGTTGTAGTCAGACAGTGTCCGGCCATCT 299 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| ||||| ||||| ||||| ||||| || || | || ||||||||| Sbjct 298 TCCAACTGCTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGTGGGATGCCCTCCTTGTCC 239 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| ||||| || || || || |||||||||||| Sbjct 238 TGAATCTTAGACTTGACGTTGTCGATTGTGTCTGATGACTCGACTTCAAGAGTGATCGTC 179 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| | ||||| ||||| | |||||| Sbjct 178 TTTCCCGTCAAGGTCTTGACAAAGATCTGCAT 147 Score = 118 bits (130), Expect = 2e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| || || || |||||||| || |||| ||||| | ||||| Sbjct 130 AGGACCAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCCGAGAGGGTTCGGCCATCC 71 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || || || ||||||||||||| || ||||||||| Sbjct 70 TCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC 11 Query 211023 TGGATCTT 211030 |||||||| Sbjct 10 TGGATCTT 3 >seq4985 Length=7965 Score = 114 bits (126), Expect = 3e-20 Identities = 102/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | || || Sbjct 7827 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 7886 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| |||||||| || || || ||||| || |||| |||||||||||| Sbjct 7887 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 7946 Query 211023 TGGATCTT 211030 |||||||| Sbjct 7947 TGGATCTT 7954 >seq2165 Length=4774 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 || ||||||||||||||||| ||||| || || |||||||| ||| ||| |||||| Sbjct 3 CCCTCCTTGTCCTGGATCTTGGACTTCACATTGTCTATGGTGTCGGAGGATTCGACCTCG 62 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| ||||| || ||||| ||||| || || | |||||| Sbjct 63 AGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 106 >seq13121 Length=2348 Score = 87.8 bits (96), Expect = 4e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||| | ||||| || ||||||||||| |||||||| Sbjct 103 TTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCAAGCTGCTTGCCGGCGAAGATC 44 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 | || || ||||| || |||| || |||||||||||||||| Sbjct 43 AATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158953255420430