Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq279 232 7e-56 seq1 156 4e-33 seq512 147 2e-30 seq24 118 1e-21 >seq279 Length=349471 Score = 232 bits (256), Expect = 7e-56 Identities = 330/462 (71%), Gaps = 2/462 (0%) Strand=Plus/Minus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC 117028 |||||| || |||||||||| ||||| || |||||| | | | ||| || || Sbjct 263128 CCGTGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCCAGGACCGCGAGTCCACC 263069 Query 117029 TTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTC 117088 | || | |||| ||||| |||||||| |||||||||||| ||||||| ||| ||| Sbjct 263068 TACGCCCAGCGACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGTGGCGCATTC 263009 Query 117089 GCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAG 117148 ||| | || || ||||||||||| || ||||||||||| |||||||| ||| ||||||| Sbjct 263008 GCCTCTATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAG 262949 Query 117149 CTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 ||||| || | || ||||||||||| |||||| |||||| | |||||| || || Sbjct 262948 CTCATTTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTCCTGTTCTCTCACCTG 262889 Query 117209 GTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAG 117268 | | || || ||| | ||| ||| ||| ||| ||||||| || |||||||| ||| Sbjct 262888 AGGAACCGTCCAAGCAAGCAGCGTGTCCAGGACATCATCACCGAGGCTGTCGCCATTGAG 262829 Query 117269 CAGCGCTTCCTCACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAACGAT 117327 || ||| | ||||| || ||||| |||| || || || | || | | | || Sbjct 262828 AAGGAGTTCTTGACCGAGGCTCTGCC-ATGCGCCCTCCTCGGCATGAACTCCAACCTCAT 262770 Query 117328 GTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCA 117387 | ||| ||||||||||| || |||||| | || ||| ||| |||| | || ||| Sbjct 262769 GAAGCAGTACATCGAGTTTGTTGCCGACCGTCTCCTGGTCGCTCTGGGCAACGAGAAGGT 262710 Query 117388 CTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTC 117429 ||||| || | ||||| | ||||| ||| | |||||| Sbjct 262709 TTACAAGTCGTCGAACCCCTTCGACTTCATGGAGAACATCTC 262668 Score = 170 bits (188), Expect = 2e-37 Identities = 209/285 (73%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||| || || || |||||||| | ||||||| | || || Sbjct 263522 ATCTGGCAGATGTACAAGAAGCATGAAGCTTCCTTCTGGACTGCCGAGGAGATCGATCTC 263463 Query 116696 TCCAAGGACACGAGCGACTGGG---AGCGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| | ||||||| | ||| ||| |||| |||| || | ||| || Sbjct 263462 TCCAAGGACCTGCACGACTGGAGCAACCGCCTGACCGACGACGAACGATACTTCGTCTCC 263403 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||| | || ||||| ||||| || || || |||||||||||||| ||||| ||||| Sbjct 263402 CACATCCTCGCCTTCTTCGCTGCTTCAGATGGAATCGTCAACGAGAACCTGGTGGAGCGC 263343 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| ||||| ||| | | |||||||| |||||||||||||| |||||| ||| Sbjct 263342 TTCAGCGGCGAGGTTCAGATCCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATG 263283 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | ||| ||| ||||||||||| ||| Sbjct 263282 GAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACCTAC 263238 >seq1 Length=1124325 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||||||||| || |||||| | || || || | || Sbjct 67468 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTCC 67527 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| || ||||| ||| | |||||| Sbjct 67528 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 67587 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| ||||||||| |||||||||| Sbjct 67588 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAAC 67647 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 |||||||||||| |||| ||||| || || ||||| || | || || ||| Sbjct 67648 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGCGGTGGTGGC 67698 >seq512 Length=287951 Score = 147 bits (162), Expect = 2e-30 Identities = 160/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || ||||| || || Sbjct 18637 ATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCCTCC 18578 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | ||||| |||||||||||| | ||||| Sbjct 18577 GATACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 18519 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || ||||| ||||| || |||| ||||||||| ||||||||| Sbjct 18518 GCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 18459 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || |||||| | || || ||||| || Sbjct 18458 CATTCAAAAGGAGTCTACCCTCCATCTCGT 18429 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||| ||| |||| ||||| || | Sbjct 18409 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCA 18350 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||||| || || | ||||| |||||||||||| | |||||| Sbjct 18349 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 18290 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || ||||| || || | ||| |||||| |||||||||| Sbjct 18289 CAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGAACCCTCTCCGACTACAAC 18230 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||| | || || || || || Sbjct 18229 ATCCAGAAGGAATCTACTCTTCACCTGGT 18201 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | |||||||| || ||||| | || ||||| | | Sbjct 18181 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCG 18122 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| ||||| || |||| ||||| ||||| || || | ||||| Sbjct 18121 GACACGATTGACAACG-TCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCA 18063 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||| | ||| ||||| ||| |||| || | || || || |||||||| Sbjct 18062 GCAACGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAA 18003 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | |||||||| || ||| Sbjct 18002 CATCCAGAAGGAATCGACGCTGCACCTGGTG 17972 >seq24 Length=629884 Score = 118 bits (130), Expect = 1e-21 Identities = 137/182 (75%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| || |||||| | || || || || | |||| | | Sbjct 219240 TTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCCTCTGACACCATC 219299 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||| |||||||| ||| | |||||||| ||| | Sbjct 219300 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGATT 219358 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| ||||| ||||| || || | |||||||| |||||||||||||||||| Sbjct 219359 GATCTTCGCCGGCAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAA 219418 Query 40878 GG 40879 || Sbjct 219419 GG 219420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515212856363600