Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 3e-17
seq512 102 9e-17
seq24 89.7 6e-13
>seq1
Length=1124325
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| |||| |||| ||| |||||| || || ||||| || | || || || ||
Sbjct 67682 CGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCG 67623
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||| | || | || ||||||
Sbjct 67622 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTG 67563
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || |||| | | | |||||| || ||||| || | |||||
Sbjct 67562 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATA 67503
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| |||||||| || ||||| || ||||| |||||
Sbjct 67502 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 67468
>seq512
Length=287951
Score = 102 bits (112), Expect = 9e-17
Identities = 140/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||||||||| ||||| || | || || || |||| || |||||||| || || ||
Sbjct 18446 CTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 18505
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
|| || ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 18506 GATAAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 18564
Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
| | | || ||| || || || || | |||||||| ||||| || || ||||| |
Sbjct 18565 TGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 18624
Query 43171 CAAAGATTTGCAT 43183
| ||||| |||||
Sbjct 18625 CGAAGATCTGCAT 18637
Score = 93.3 bits (102), Expect = 5e-14
Identities = 135/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| || || ||||| || | || || ||| | || || |||||||| ||||| ||
Sbjct 18219 TCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGCCCATCCTCGAGCTGCTTTCCAGCAAAG 18278
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| || ||||||||||| | || | || |||||||||| ||| || |||| |
Sbjct 18279 ATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 18338
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | ||||| || || || |||| || ||||| ||||| || || ||||| ||
Sbjct 18339 TCGATGGTGTCTGAGGACTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGAGTCTTGACG 18398
Query 43173 AAGATTTGCAT 43183
||||| |||||
Sbjct 18399 AAGATCTGCAT 18409
>seq24
Length=629884
Score = 89.7 bits (98), Expect = 6e-13
Identities = 131/183 (72%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || | ||| || || | || || |||||||| || ||||| |
Sbjct 219420 CCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGA 219361
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113
| | |||||||||||| | || | || |||||||||| ||| || |||| ||| |
Sbjct 219360 TCAATCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTG 219302
Query 43114 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | ||||| || ||||| || | ||||| || |||||||| || ||||| ||
Sbjct 219301 TCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACG 219242
Query 43173 AAG 43175
|||
Sbjct 219241 AAG 219239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571810559495800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |