Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq334 251 6e-62 seq279 156 4e-33 seq512 105 6e-18 seq1 102 7e-17 >seq334 Length=742376 Score = 251 bits (278), Expect = 6e-62 Identities = 632/956 (66%), Gaps = 6/956 (1%) Strand=Plus/Plus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || || ||||| | ||||| || || ||||| ||| || | |||||| | || || Sbjct 395198 GCAATGGAGGCCAAGTTGCACACCGCGACCTCATCTGGGGCAGAGTACTCAATGATCTCA 395257 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || |||||| | || || |||| || |||||||||| || || ||| Sbjct 395258 GTGCAAAGATTGGAGCTTCGGATGGTACCCAGGTTCTTCTGGTTGCTCTTCCGGTTGGCG 395317 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 |||||||| |||||| | || |||| ||||| ||| | ||||| || || | Sbjct 395318 TGGTCCTTGTACAGCATGAAGGGGTTGCCAGTCTCAGTCTGGGCCTCGAGAATGGCATAC 395377 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTACCTG-CCTTCTTCCTCGTACTTTTGGTA 23259 || | |||| || | | ||| || | | || || | |||||||| | ||| Sbjct 395378 CATAGCTTCTGGGCCTTCATG-GTCTTGCGACCACGACCCTCCTTCTCGTACTGCTCGTA 395436 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | || ||||| || ||||||| |||||||| ||||| || | | | || ||||| Sbjct 395437 GAGAGCCTCAAACTCCTCACCGTAGCAGTCGGCGAGGCCAGGACACTCGTTAGGGCACAT 395496 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 || |||| || || || || || |||| |||||||| || ||||| || || Sbjct 395497 CAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATGAAAAGATCGGGAATCCAGAGGGC 395556 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 ||| || || ||||| || | |||||| || ||| ||||| || || | ||| Sbjct 395557 AAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCGTGATTCTTGCGCAGGTCAAGAAA 395616 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || || || || ||||| ||||| ||||| | || || || || || | ||| || Sbjct 395617 CTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATAGCGAAGGCACCGGGACGCTTGTT 395676 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 ||| ||||| |||||||| ||||| ||||||||| | || | ||||| || || || Sbjct 395677 GCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAGACCCGCAGCATTGGGGTGATGCC 395736 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 || || | ||| ||| || | || || | || || | | ||| |||| Sbjct 395737 ATTAGAGGTACCGTTGGTGCCAGCGATGTATGAGCCGGTGGCACGGATGCGGTGCACGTT 395796 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 | ||| || || || || || || ||||| || || || || ||||| || || Sbjct 395797 CAGACCAATTCCACCCGCCATCTTGGAGATCATAGCACAAGTCTTTAGGGTGTCATAAAT 395856 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 |||||| ||||||||||| || | |||| | ||| || || |||| || | | ||| Sbjct 395857 GCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGAAGCATGATGACAGCTGGGGCTGGGG 395916 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 || | || ||||| ||| ||| ||| || || ||| | || ||||| || || Sbjct 395917 AGTGCCAGCATTGAACAATGTGGGGGAGGCATGTGTGAAGAACTTGTTTGACATCAGGTT 395976 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || || ||| | || | || ||||| ||||||| ||||| ||||| || Sbjct 395977 GTATGTCTCAATGACCCTTTCGACATCGTCTCCCCAGATACCGACAGCGACACGCATGAT 396036 Query 23860 CATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGC 23917 ||||| || || | |||||| | | | || | | |||| || |||||||| | | Sbjct 396037 CATGTGCTGTGGCCGCTCGACAACTTTA--CCATCGAGCTTGAGGAGGTATGAACGCTCC 396094 Query 23918 ATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | || || || || ||||| | ||| ||||||||| |||| || |||||||| Sbjct 396095 AGGGTCTTGAAGCCGAAATATTGGTAGCCAAAGTCACGGTCGTAAACAATGGCCGA 396150 >seq279 Length=349471 Score = 156 bits (172), Expect = 4e-33 Identities = 331/487 (68%), Gaps = 14/487 (3%) Strand=Plus/Minus Query 57914 CAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGAGA 57972 ||||||||| || ||| | |||| ||||| | | ||| | | |||| | |||| || Sbjct 263117 CAAGAAGGCCGACTGGGCTCTCAAGTGGATCCAGGACCGCGA-GTCCACCTACGCCCAGC 263059 Query 57973 GGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATAT 58032 | || | || ||||| |||||||| || || ||||| ||| || || | || | Sbjct 263058 GACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGTGGCGCATTCGCCTCTATTT 262999 Query 58033 TTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC 58092 | ||| | ||||| || ||||| ||||| |||||||| || ||||||| | || || | Sbjct 262998 TCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAACGAGCTCATTTCTC 262939 Query 58093 GCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC 58152 | || |||||||| || || || || || || || ||| ||||||| | | ||| Sbjct 262938 GTGATGAGGGTCTGCACACCGACTTCGCCTGTCTCCTGTTCTCTCACCTG----AGGAAC 262883 Query 58153 CGAC---GCGGG-ATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 || | || | | || || |||||| ||||||||||| ||||| || || || ||| Sbjct 262882 CGTCCAAGCAAGCAGCGTGTCCAGGACATCATCACCGAGGCTGTCGCCATTGAGAAGGAG 262823 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| || || || ||| | ||||| |||||| | | ||| || Sbjct 262822 TTCTTGACCGAGGCTCTGCCATGCGCCCTCCTCGGCATGAACTCCAACCTCATGAAGCAG 262763 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326 ||||| ||||||||||||||| | || || ||| || | |||| || ||||| Sbjct 262762 TACATCGAGTTTGTTGCCGACCGTCTCCTGGTCGCTCTGGGCAACGAGAAGGT--TTACA 262705 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 | || || || || || || ||| | ||||| |||| |||||||| ||||| | Sbjct 262704 AGTCGTCGAACCCCTTCGACTTCATGGAGAACATCTCTCTCGGTGGCAAGACCAACTTCT 262645 Query 58387 TCGAAAA 58393 | || || Sbjct 262644 TTGAGAA 262638 >seq512 Length=287951 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| ||||| |||||||| | || || || | || Sbjct 18181 ATGCAGATTTTCGTCAAGACCTTGACGGGCAAGACGATCACGCTTGAGGTCGAGTCATCG 18122 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||| || | || || |||||| Sbjct 18121 GACACGATTGACAACGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCAGACCAG 18062 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||||||||| ||||||||||| ||| | || || ||| Sbjct 18061 CAACGTCTCATTTTCGCTGGCAAGCAGTTGGAAGATGGCCGGACGCTATCTGACTACAAC 18002 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || || |||||||| || || ||||| ||| Sbjct 18001 ATCCAGAAGGAATCGACGCTGCACCTGGTGCTT 17969 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || || ||| |||| || || | || Sbjct 18409 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACCCTCGAGGTCGAGTCCTCA 18350 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || ||||||||| ||| | || || |||||| Sbjct 18349 GACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 18290 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || ||||| || ||| | || || || | ||| || ||| Sbjct 18289 CAGCGTCTGATCTTTGCTGGAAAGCAGCTCGAGGATGGGCGAACCCTCTCCGACTACAAC 18230 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| |||||||| ||||| || Sbjct 18229 ATCCAGAAGGAATCTACTCTTCACCTGGTTCT 18198 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || |||||||| || |||||| | || || || | || Sbjct 18638 CATGCAGATCTTCGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTCGAGTCCTC 18579 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 18578 CGATACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 18519 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| | || ||| || | ||| || || Sbjct 18518 GCAGCGCCTTATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 18459 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||||| || || || || ||||| || || | || | ||||||| Sbjct 18458 CATTCAAAAGGAGTCTACCCTCCATCTCGTCCTCCGTCTTCGTGGCGGTA 18409 >seq1 Length=1124325 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 67467 CATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTTGAGGTGGAGTCTTC 67526 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | ||||| | || ||||||||||||| | || || ||||| Sbjct 67527 CGACACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 67586 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| | || ||| || | ||| || || Sbjct 67587 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAA 67646 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || || ||||| || | ||| | || ||| Sbjct 67647 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGCGCGGTGGT 67695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445760911501200