Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq334 118 1e-21 seq279 116 5e-21 >seq334 Length=742376 Score = 118 bits (130), Expect = 1e-21 Identities = 356/544 (65%), Gaps = 7/544 (1%) Strand=Plus/Plus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | ||||| || ||||| |||| || | | || || || |||||||| Sbjct 394280 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCAGCTGCCTGGGTGCGGAGGTAGTACATG 394339 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAACT 64945 || || || |||||||| |||| ||| || ||||| || || | ||| || | Sbjct 394340 CCAGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATTGAT 394399 Query 64946 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 65005 || || || ||||| || | ||| ||| |||||| |||||||| || | ||| || Sbjct 394400 -GGCTCCCTCATGTGGATGTTTAGAGACTGAGATTGATCAATGAAGGCACCACGGTCAGC 394458 Query 65006 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 65065 |||||| | | || ||| | || | || ||||| | || || || | ||| || Sbjct 394459 AGCCATCTGCACAATGGTCCTCTGAGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGAT 394518 Query 65066 ATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 65122 ||| | || | | | | | ||||||||||| ||| | || || || || | ||||| Sbjct 394519 ATCAGCCGGGATGCTAGGAATGTTCTGAATGGAACCATCCTCGGCGATGATACGGTTCTT 394578 Query 65123 GATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 65182 || | ||| ||| || ||| || | | | || ||||| || || || || Sbjct 394579 CATGGCCTCAGACCACAAGCCGAGCTCTGTCAGATCCCTGAGGAGCCAAGGGTTGACGAC 394638 Query 65183 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGA 65242 || || || |||| | || | || ||| || || ||| || || || | | Sbjct 394639 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCAAAGCA 394698 Query 65243 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACT 65302 |||||| || |||| ||||| | || || ||||| ||||| ||||||| ||| || || Sbjct 394699 CTCATTGTTGCCCAGGATTTGCGACGTCGAAGCAGTGGGCATTGGTGCCAGCAACAAGCT 394758 Query 65303 ATTTCTAAGACC-GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 65361 || | || ||| || | | |||| || || || || | ||||| | ||| || || | Sbjct 394759 GTTGCGAACACCAGTCTCCT-TGATCTTCTCCTTCAGTGCATCCCAGTCCCAGAGGTCGG 394817 Query 65362 ACGG 65365 | || Sbjct 394818 AGGG 394821 >seq279 Length=349471 Score = 116 bits (128), Expect = 5e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 |||| | ||| ||||| ||| ||| |||||||| || | | ||| | |||||||| Sbjct 262899 AACAGGAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAG 262958 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || || || ||||| ||||||||||| || ||||| || || || || |||| ||| Sbjct 262959 AAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAATGCGCCA 263018 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 36325 ||||| || || || || || || ||||||| |||| || | || || | Sbjct 263019 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCGTAGGTGGACTCG 263078 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 36363 | ||| || |||||||| ||||||| ||||||||||| Sbjct 263079 CGGTCCTGGATCCACTTGAGAGCCCAGTCGGCCTTCTT 263116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658164696247400