Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq556 136 3e-27
>seq556
Length=684303
Score = 136 bits (150), Expect = 3e-27
Identities = 219/306 (72%), Gaps = 18/306 (6%)
Strand=Plus/Plus
Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168
|||||||||||| | |||| | ||| ||||| || || |||||| | ||||| || |
Sbjct 379777 CACGTAAAACTG-CGCAAACATGTGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGCCG 379835
Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCC---GCCTGTTAAT-TAGATCC 21224
|||||||||||| ||| | ||||||||| |||| || || || | | ||||
Sbjct 379836 GGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGATC- 379894
Query 21225 ACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTAC 21284
||| || ||||||||| || ||||| ||| ||||| ||| | || | ||||
Sbjct 379895 ACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCTTTCGCGTCGACGTAC 379951
Query 21285 TCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGG 21341
|| ||||| ||||| | |||||||||||||||||| || ||||| |||| ||||||||
Sbjct 379952 TCGGCCCCGAAATGCCGCCACTGGAACCCGTACACTGGGCCCAGGTCGCCCGCCTCGCGG 380011
Query 21342 CGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTT 21400
|| || ||||| ||| | | | | |||| ||||||| ||||||| || ||
Sbjct 380012 TGGCCC----AGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTT 380067
Query 21401 TACGCC 21406
|||||
Sbjct 380068 GACGCC 380073
Score = 111 bits (122), Expect = 1e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 20876 AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAAC 20935
||||| |||| ||||| ||||| |||| |||||| | | ||| | || ||
Sbjct 379465 AATCTCCAGCTCGGGAAATTCGCGCGGCTCCCTCTCCAGCTGCACCCTCAGCGCGTCGAC 379524
Query 20936 GTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC-AGGC 20994
||||| || ||||| ||||| |||| | |||| | | || |||||| | |||
Sbjct 379525 GTGGTCCGCATAGACGTGCGCGTCGCCCATGACGTGCGTCAGG-CTGCCGGGGACGAGGT 379583
Query 20995 CCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCC 21054
| ||||| ||||||| | |||||| || | |||||||||||| || || ||||| |
Sbjct 379584 CACACACGTGCGCGATCATGTGCGTCAGCAGCGAGTAGCTGGCGATATTGAAAGGGACGC 379643
Query 21055 CGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092
| |||||||||||| ||| | ||||||||||||||||
Sbjct 379644 CCAGGCCCATGTCGCAGGAGCGCTGGTACAGCTGGCAG 379681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427770864682800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |