Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq556 136 3e-27 >seq556 Length=684303 Score = 136 bits (150), Expect = 3e-27 Identities = 219/306 (72%), Gaps = 18/306 (6%) Strand=Plus/Plus Query 21110 CACGTAAAACTGACACAAA-ACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 |||||||||||| | |||| | ||| ||||| || || |||||| | ||||| || | Sbjct 379777 CACGTAAAACTG-CGCAAACATGTGGCAAGGCGGCAGCGCCATCTTCTTCAGGTCGGCCG 379835 Query 21169 GGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCC---GCCTGTTAAT-TAGATCC 21224 |||||||||||| ||| | ||||||||| |||| || || || | | |||| Sbjct 379836 GGTTCCACGCGCTCATGATGATGCGCCGGTCGTACGGGTTGTGCTTGAGCTTGTGGATC- 379894 Query 21225 ACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTAC 21284 ||| || ||||||||| || ||||| ||| ||||| ||| | || | |||| Sbjct 379895 ACCTCGGC---CAGCTGGTCGACGCCCTGGCCCGTGTAGTCGGCTTTCGCGTCGACGTAC 379951 Query 21285 TCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGC---CCTCGCGG 21341 || ||||| ||||| | |||||||||||||||||| || ||||| |||| |||||||| Sbjct 379952 TCGGCCCCGAAATGCCGCCACTGGAACCCGTACACTGGGCCCAGGTCGCCCGCCTCGCGG 380011 Query 21342 CGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTT 21400 || || ||||| ||| | | | | |||| ||||||| ||||||| || || Sbjct 380012 TGGCCC----AGCCCCACGCTGTCGAGGTACTCGCGAGACCCGTTGCCGTCCCAGATCTT 380067 Query 21401 TACGCC 21406 ||||| Sbjct 380068 GACGCC 380073 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 20876 AATCTTCAGCCGCGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAAC 20935 ||||| |||| ||||| ||||| |||| |||||| | | ||| | || || Sbjct 379465 AATCTCCAGCTCGGGAAATTCGCGCGGCTCCCTCTCCAGCTGCACCCTCAGCGCGTCGAC 379524 Query 20936 GTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC-AGGC 20994 ||||| || ||||| ||||| |||| | |||| | | || |||||| | ||| Sbjct 379525 GTGGTCCGCATAGACGTGCGCGTCGCCCATGACGTGCGTCAGG-CTGCCGGGGACGAGGT 379583 Query 20995 CCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCC 21054 | ||||| ||||||| | |||||| || | |||||||||||| || || ||||| | Sbjct 379584 CACACACGTGCGCGATCATGTGCGTCAGCAGCGAGTAGCTGGCGATATTGAAAGGGACGC 379643 Query 21055 CGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 | |||||||||||| ||| | |||||||||||||||| Sbjct 379644 CCAGGCCCATGTCGCAGGAGCGCTGGTACAGCTGGCAG 379681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427770864682800