Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq334 183 4e-41 seq279 143 4e-29 >seq334 Length=742376 Score = 183 bits (202), Expect = 4e-41 Identities = 452/684 (66%), Gaps = 4/684 (1%) Strand=Plus/Plus Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 |||||||| |||| ||| ||||||| | ||| || || | | || || || ||||| Sbjct 395474 CCAGGACACTCGTTAGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATG 395533 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || ||||| |||||||| || || | || ||||| | || || |||||| || || Sbjct 395534 AAAAGATCGGGAATCCAGAGGGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCG 395593 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 |||||| || || || ||| | | | ||| | ||||| || || | ||| || Sbjct 395594 TGATTCTTGCGCAGGTCAAGAAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATA 395653 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | || || || ||||| || ||||| || | ||||| |||||||| || | Sbjct 395654 GCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAG 395713 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 || | || |||||| | || ||||| || ||||| ||||| || | ||| || || Sbjct 395714 ACCCGCAGCATTGGGGTGATGCCATTAGAGGTACCGTTGGTGCCAGCGATGTATGAGCCG 395773 Query 80191 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248 ||||||| || | | || | |||| ||||| || ||||| || ||||| | | Sbjct 395774 GTGGCACGGATGCGGTGCACGTTCA--GACCAATTCCACCCGCCATCTTGGAGATCATAG 395831 Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308 | || |||| || ||||| |||||||| ||||| || || |||||| | || | Sbjct 395832 CACAAGTCTTTAGGGTGTCATAAATGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGA 395891 Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368 | || |||| ||| | | ||| || ||||| || || || || || || || | Sbjct 395892 AGCATGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTG 395951 Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 80428 | || | || | |||| || ||||| |||||||| | ||| | ||| | Sbjct 395952 TGAAGAACTTGTTTGACATCAGGTTGTATGTCTCAATGACCCTTTCGACATCGTCTCCCC 396011 Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488 || || || ||||||||||| | ||||||||| || | || || | || || | Sbjct 396012 AGATACCGACAGCGACACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTACCATCGA 396071 Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548 || | | ||| || |||| || || || || ||||| | ||| |||||| | Sbjct 396072 GCTTGAGGAGGTATGAACGCTCCAGGGTCTTGAAGCCGAAATATTGGTAGCCAAAGTCAC 396131 Query 80549 GTTCGTAAATAATAACCGAGTTGA 80572 | ||||||| ||| |||||| || Sbjct 396132 GGTCGTAAACAATGGCCGAGTCGA 396155 Score = 125 bits (138), Expect = 1e-23 Identities = 365/556 (66%), Gaps = 7/556 (1%) Strand=Plus/Plus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||| | ||||| || ||||| |||| || | | || || || |||||||| Sbjct 394280 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCAGCTGCCTGGGTGCGGAGGTAGTACATG 394339 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACT 78824 || || || |||||||| |||| ||| ||| ||||| || || | ||| || | Sbjct 394340 CCAGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATTGAT 394399 Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884 || || || ||||| || | ||| ||| |||||| |||||||| || | ||| || Sbjct 394400 -GGCTCCCTCATGTGGATGTTTAGAGACTGAGATTGATCAATGAAGGCACCACGGTCAGC 394458 Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 78944 |||||| | | || ||| | || | || ||||| | || || || | ||| || Sbjct 394459 AGCCATCTGCACAATGGTCCTCTGAGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGAT 394518 Query 78945 ATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 79001 ||| | || | | | | | ||||||||||| ||| | || || || || | ||||| Sbjct 394519 ATCAGCCGGGATGCTAGGAATGTTCTGAATGGAACCATCCTCGGCGATGATACGGTTCTT 394578 Query 79002 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 79061 || | ||| ||| || ||| || | | | || ||||| || || || || Sbjct 394579 CATGGCCTCAGACCACAAGCCGAGCTCTGTCAGATCCCTGAGGAGCCAAGGGTTGACGAC 394638 Query 79062 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121 || || || |||| | || | || ||| || || ||| ||||| || | | Sbjct 394639 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCAAAGCA 394698 Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181 ||||| || |||| ||||| | || || || || ||||| ||||||| ||| || || Sbjct 394699 CTCATTGTTGCCCAGGATTTGCGACGTCGAAGCAGTGGGCATTGGTGCCAGCAACAAGCT 394758 Query 79182 ATTTCTAAGACC-GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAG 79240 || | || ||| || | | |||| || || || || | ||||| ||||| || || | Sbjct 394759 GTTGCGAACACCAGTCTCCT-TGATCTTCTCCTTCAGTGCATCCCAGTCCCAGAGGTCGG 394817 Query 79241 ACGGGACAACATTCCA 79256 | || |||||||| Sbjct 394818 AGGGCTTGACATTCCA 394833 >seq279 Length=349471 Score = 143 bits (158), Expect = 4e-29 Identities = 163/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| | ||| ||||| ||| |||||||||||| || | | ||| || |||||||| Sbjct 262899 AACAGGAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAG 262958 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || || || ||||| ||||||||||| || ||||| || || || || |||| ||| Sbjct 262959 AAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAATGCGCCA 263018 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127 |||||||| || || || || || |||||||| |||| || | || ||| || Sbjct 263019 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCGTAGGTGGACTCG 263078 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165 | ||| || |||||||| ||||||| ||||||||||| Sbjct 263079 CGGTCCTGGATCCACTTGAGAGCCCAGTCGGCCTTCTT 263116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718259956315400