Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq334 183 4e-41
seq279 143 4e-29
>seq334
Length=742376
Score = 183 bits (202), Expect = 4e-41
Identities = 452/684 (66%), Gaps = 4/684 (1%)
Strand=Plus/Plus
Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950
|||||||| |||| ||| ||||||| | ||| || || | | || || || |||||
Sbjct 395474 CCAGGACACTCGTTAGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATG 395533
Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010
|| ||||| |||||||| || || | || ||||| | || || |||||| || ||
Sbjct 395534 AAAAGATCGGGAATCCAGAGGGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCG 395593
Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070
|||||| || || || ||| | | | ||| | ||||| || || | ||| ||
Sbjct 395594 TGATTCTTGCGCAGGTCAAGAAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATA 395653
Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130
|| | | || || || ||||| || ||||| || | ||||| |||||||| || |
Sbjct 395654 GCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAG 395713
Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190
|| | || |||||| | || ||||| || ||||| ||||| || | ||| || ||
Sbjct 395714 ACCCGCAGCATTGGGGTGATGCCATTAGAGGTACCGTTGGTGCCAGCGATGTATGAGCCG 395773
Query 80191 CTGGCACGAATAT--TACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 80248
||||||| || | | || | |||| ||||| || ||||| || ||||| | |
Sbjct 395774 GTGGCACGGATGCGGTGCACGTTCA--GACCAATTCCACCCGCCATCTTGGAGATCATAG 395831
Query 80249 CGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAA 80308
| || |||| || ||||| |||||||| ||||| || || |||||| | || |
Sbjct 395832 CACAAGTCTTTAGGGTGTCATAAATGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGA 395891
Query 80309 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 80368
| || |||| ||| | | ||| || ||||| || || || || || || || |
Sbjct 395892 AGCATGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTG 395951
Query 80369 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 80428
| || | || | |||| || ||||| |||||||| | ||| | ||| |
Sbjct 395952 TGAAGAACTTGTTTGACATCAGGTTGTATGTCTCAATGACCCTTTCGACATCGTCTCCCC 396011
Query 80429 GAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTA 80488
|| || || ||||||||||| | ||||||||| || | || || | || || |
Sbjct 396012 AGATACCGACAGCGACACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTACCATCGA 396071
Query 80489 TTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 80548
|| | | ||| || |||| || || || || ||||| | ||| |||||| |
Sbjct 396072 GCTTGAGGAGGTATGAACGCTCCAGGGTCTTGAAGCCGAAATATTGGTAGCCAAAGTCAC 396131
Query 80549 GTTCGTAAATAATAACCGAGTTGA 80572
| ||||||| ||| |||||| ||
Sbjct 396132 GGTCGTAAACAATGGCCGAGTCGA 396155
Score = 125 bits (138), Expect = 1e-23
Identities = 365/556 (66%), Gaps = 7/556 (1%)
Strand=Plus/Plus
Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765
|||| ||| | ||||| || ||||| |||| || | | || || || ||||||||
Sbjct 394280 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCAGCTGCCTGGGTGCGGAGGTAGTACATG 394339
Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGA-ATAACT 78824
|| || || |||||||| |||| ||| ||| ||||| || || | ||| || |
Sbjct 394340 CCAGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATTGAT 394399
Query 78825 CGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 78884
|| || || ||||| || | ||| ||| |||||| |||||||| || | ||| ||
Sbjct 394400 -GGCTCCCTCATGTGGATGTTTAGAGACTGAGATTGATCAATGAAGGCACCACGGTCAGC 394458
Query 78885 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 78944
|||||| | | || ||| | || | || ||||| | || || || | ||| ||
Sbjct 394459 AGCCATCTGCACAATGGTCCTCTGAGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGAT 394518
Query 78945 ATCTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTT 79001
||| | || | | | | | ||||||||||| ||| | || || || || | |||||
Sbjct 394519 ATCAGCCGGGATGCTAGGAATGTTCTGAATGGAACCATCCTCGGCGATGATACGGTTCTT 394578
Query 79002 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTAC 79061
|| | ||| ||| || ||| || | | | || ||||| || || || ||
Sbjct 394579 CATGGCCTCAGACCACAAGCCGAGCTCTGTCAGATCCCTGAGGAGCCAAGGGTTGACGAC 394638
Query 79062 TTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGA 79121
|| || || |||| | || | || ||| || || ||| ||||| || | |
Sbjct 394639 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCAAAGCA 394698
Query 79122 TTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACT 79181
||||| || |||| ||||| | || || || || ||||| ||||||| ||| || ||
Sbjct 394699 CTCATTGTTGCCCAGGATTTGCGACGTCGAAGCAGTGGGCATTGGTGCCAGCAACAAGCT 394758
Query 79182 ATTTCTAAGACC-GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAG 79240
|| | || ||| || | | |||| || || || || | ||||| ||||| || || |
Sbjct 394759 GTTGCGAACACCAGTCTCCT-TGATCTTCTCCTTCAGTGCATCCCAGTCCCAGAGGTCGG 394817
Query 79241 ACGGGACAACATTCCA 79256
| || ||||||||
Sbjct 394818 AGGGCTTGACATTCCA 394833
>seq279
Length=349471
Score = 143 bits (158), Expect = 4e-29
Identities = 163/218 (75%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| | ||| ||||| ||| |||||||||||| || | | ||| || ||||||||
Sbjct 262899 AACAGGAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAG 262958
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || || || ||||| ||||||||||| || ||||| || || || || |||| |||
Sbjct 262959 AAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAATGCGCCA 263018
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CG 50127
|||||||| || || || || || |||||||| |||| || | || ||| ||
Sbjct 263019 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCGTAGGTGGACTCG 263078
Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 50165
| ||| || |||||||| ||||||| |||||||||||
Sbjct 263079 CGGTCCTGGATCCACTTGAGAGCCCAGTCGGCCTTCTT 263116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718259956315400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |