Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq334 165 1e-35 seq279 134 2e-26 >seq334 Length=742376 Score = 165 bits (182), Expect = 1e-35 Identities = 445/679 (66%), Gaps = 4/679 (1%) Strand=Plus/Plus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 |||||||| || || || ||||||| | ||| || || | | | || || ||||| Sbjct 395474 CCAGGACACTCGTTAGGGCACATCAGGGTCCAGTCACCGTTCTTCTCGACCCGCTTCATG 395533 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 || ||||| |||||||| || || | || ||||| | || || |||||| || || Sbjct 395534 AAAAGATCGGGAATCCAGAGGGCAAGGAAAAGATCACGGGCTCGGATCTCCTCCTTACCG 395593 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 |||||| || || || ||| | | | ||| | ||||| || || | ||| || Sbjct 395594 TGATTCTTGCGCAGGTCAAGAAACTCGAAGACATCGGCGTGCCATGGCTCAAGGTAGATA 395653 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || || ||||| || ||||| || | ||||| |||||||| || | Sbjct 395654 GCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCGACGTATCGGGCGGTGTTGTTGAAG 395713 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 || | || |||||| | || ||||| || | ||| ||||| || | ||| || || Sbjct 395714 ACCCGCAGCATTGGGGTGATGCCATTAGAGGTACCGTTGGTGCCAGCGATGTATGAGCCG 395773 Query 72274 CTGGCACGAATAT--TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||||||| || ||| || | |||| ||||| || ||||| || ||||| | | Sbjct 395774 GTGGCACGGATGCGGTGCACGTTCA--GACCAATTCCACCCGCCATCTTGGAGATCATAG 395831 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | || |||| || ||||| |||||||| || || || ||| |||||| | || | Sbjct 395832 CACAAGTCTTTAGGGTGTCATAAATGCCCTCAATGCTGTCCTCCTTCATGTCGACGAGGA 395891 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 | || |||| ||| | | ||| || ||||| || || || || || || || | Sbjct 395892 AGCATGATGACAGCTGGGGCTGGGGAGTGCCAGCATTGAACAATGTGGGGGAGGCATGTG 395951 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 72511 | || | || | |||| || ||||| |||||||| | ||| | ||| | Sbjct 395952 TGAAGAACTTGTTTGACATCAGGTTGTATGTCTCAATGACCCTTTCGACATCGTCTCCCC 396011 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTA 72571 || || || ||||||||||| | ||| ||||| || | || || | || || | Sbjct 396012 AGATACCGACAGCGACACGCATGATCATGTGCTGTGGCCGCTCGACAACTTTACCATCGA 396071 Query 72572 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 || | | ||| || |||| || || || || ||||| | ||| |||||| | Sbjct 396072 GCTTGAGGAGGTATGAACGCTCCAGGGTCTTGAAGCCGAAATATTGGTAGCCAAAGTCAC 396131 Query 72632 GTTCGTAAATAATAACCGA 72650 | ||||||| ||| |||| Sbjct 396132 GGTCGTAAACAATGGCCGA 396150 Score = 118 bits (130), Expect = 1e-21 Identities = 324/493 (66%), Gaps = 5/493 (1%) Strand=Plus/Plus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || ||||| ||||| | || || || | || || || ||||||||| Sbjct 394280 TCCTGGTCGACAGTGAACTGGATGGGTGCGGCAGCTGCCTGGGTGCGGAGGTAGTACATG 394339 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTG-GAATAGCT 70907 || || || |||||||| |||| ||| || ||||| || || | ||| || | | Sbjct 394340 CCAGTCTTGAGACCGAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATTGAT 394399 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 || || ||||| || || | |||||| |||||| |||||||| || | ||| || Sbjct 394400 -GGCTCCCTCATGTGGATGTTTAGAGACTGAGATTGATCAATGAAGGCACCACGGTCAGC 394458 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAAT 71027 |||||| | | || ||| | || | || ||||| | || || || | ||| || Sbjct 394459 AGCCATCTGCACAATGGTCCTCTGAGAGATCTCCCAGACGGTCTTGTAGAGGGCCTTGAT 394518 Query 71028 ATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTT 71084 ||| | || | | | | | ||||||||||| ||| | || || || || | || || Sbjct 394519 ATCAGCCGGGATGCTAGGAATGTTCTGAATGGAACCATCCTCGGCGATGATACGGTTCTT 394578 Query 71085 GATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTAC 71144 || | ||| ||| || ||| || | | | || ||||| ||| || || || Sbjct 394579 CATGGCCTCAGACCACAAGCCGAGCTCTGTCAGATCCCTGAGGAGCCAAGGGTTGACGAC 394638 Query 71145 TTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGA 71204 || || || |||| | || | || ||| || || ||| || || || | | Sbjct 394639 CTGGAACTCGCCAGCGAGCACACGTCGCTGGTAGATGTTGGAGGTGTATGGCTCAAAGCA 394698 Query 71205 CTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACT 71264 |||||| || |||| ||||| | || || ||||| ||||| ||||||| ||| | || Sbjct 394699 CTCATTGTTGCCCAGGATTTGCGACGTCGAAGCAGTGGGCATTGGTGCCAGCAACAAGCT 394758 Query 71265 ATTTCTAAGACCA 71277 || | || |||| Sbjct 394759 GTTGCGAACACCA 394771 >seq279 Length=349471 Score = 134 bits (148), Expect = 2e-26 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| | ||| ||||| ||| ||||||||||||||| | | ||| | |||||||| Sbjct 262899 AACAGGAGACAGGCGAAGTCGGTGTGCAGACCCTCATCACGAGAAATGAGCTCGTTGGAG 262958 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || || || || ||||| ||||||||||| || ||||| || ||||| || |||| ||| Sbjct 262959 AAGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAAATAGAGGCGAATGCGCCA 263018 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CA 42232 |||||||| || || || || || ||||||| |||| || | || || | Sbjct 263019 CTGAAGAAGATGCCCTCGACGGCAGCGAAGGCAACCAGTCGCTGGGCGTAGGTGGACTCG 263078 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 42270 | ||| || |||||||| ||||||| ||||||||||| Sbjct 263079 CGGTCCTGGATCCACTTGAGAGCCCAGTCGGCCTTCTT 263116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671130936598600