Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11]
985 sequences; 64,714,568 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq279 140 5e-28
seq334 132 7e-26
seq556 86.0 9e-12
>seq279
Length=349471
Score = 140 bits (154), Expect = 5e-28
Identities = 203/287 (71%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078
|| ||| | |||||||| ||| | | || ||||| ||||| | ||| ||| |||||||
Sbjct 263522 ATCTGGCAGATGTACAAGAAGCATGAAGCTTCCTTCTGGACTGCCGAGGAGATCGATCTC 263463
Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138
|||||||||||| |||| ||| | || |||| || || ||| | || | ||
Sbjct 263462 TCCAAGGACCTGCACGACTGGAGCAACCGCCTGACCGACGACGAACGATACTTCGTCTCC 263403
Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198
||||| | |||||||| || | || ||||||||||||||||| || ||| || ||
Sbjct 263402 CACATCCTCGCCTTCTTCGCTGCTTCAGATGGAATCGTCAACGAGAACCTGGTGGAGCGC 263343
Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258
||| ||| | || ||||||| | ||||| ||||| ||||| ||||||||
Sbjct 263342 TTCAGCGGCGAGGTTCAGATCCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATG 263283
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305
|||||| | ||||| || | |||||| || || |||| |||||
Sbjct 263282 GAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACCTACAT 263236
Score = 134 bits (148), Expect = 2e-26
Identities = 342/512 (67%), Gaps = 25/512 (5%)
Strand=Plus/Minus
Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411
|| |||| || || || ||||| | |||| | ||||||| | ||| | ||||
Sbjct 263131 GTCCCGTGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCCAGGACCGCGAGTCC 263072
Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471
| |||||| | ||||||| || ||||| ||||| |||||||||||||| ||
Sbjct 263071 ACCTACGCCCAGCGACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGTGGCGCA 263012
Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531
|| || | || || |||||||||||||| || |||||||| || ||||| | |||
Sbjct 263011 TTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAAC 262952
Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAA 125590
||| | || ||||| || ||||| || ||| ||||| ||| ||| ||||| || ||
Sbjct 262951 GAGCTCATTTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTCCTGTTCTCTCAC 262892
Query 125591 CT----ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646
|| | | ||| || || | ||||| || ||| ||||| | ||||
Sbjct 262891 CTGAGGAAC--CGT-CCAAG----CAAGCAGCG-TGTCCAGGACATCA------TCACCG 262846
Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706
| || || || || | ||||| | ||||| | || || | | | | ||||
Sbjct 262845 AGGCTGTCGCCATTGAGAAGGAGTTCTTGACCGAGGCTCTGCCATGCGCCCTCCTCGGCA 262786
Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766
|||||| ||| || ||| ||||||| |||||||| || || ||||| ||| ||
Sbjct 262785 TGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTCCTGGTCGCTC 262726
Query 125767 TGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823
|| ||| || ||| ||||||| | ||| ||||| || |||||| | ||| |
Sbjct 262725 TG---GGCAACGAGAAGGTTTACAAGTCGTCGAACCCCTTCGACTTCATGGAGAACATCT 262669
Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855
| || | || ||||||||||| || ||||||
Sbjct 262668 CTCTCGGTGGCAAGACCAACTTCTTTGAGAAG 262637
>seq334
Length=742376
Score = 132 bits (146), Expect = 7e-26
Identities = 309/461 (67%), Gaps = 10/461 (2%)
Strand=Plus/Minus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
|||||||| ||||| ||||| || || || || || | || ||||| | || ||
Sbjct 395697 CGATACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCA 395638
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || || || ||| | || ||||||| || || || |||
Sbjct 395637 TGGCACGCCGATGTCTTCGAGTTTCTTGACCTGCGCAAGAATCACGGTAAGGAGGAGATC 395578
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040
|||||| | || | || ||| |||||| | || ||| | ||||||||||| |||
Sbjct 395577 CGAGCCCGTGATCTTTTCCTTGCCCTCTGGATTCCCGATCTTTTCATGAAGCGGGTCGAG 395518
Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100
|| |||||| |||||| ||| |||||||| || || || || || |||| |||
Sbjct 395517 AAGAACGGTG---ACTGGACCCTGATGTGCCCTAACGAGTGTCCTGGCCTCGCCGACTGC 395461
Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAG 97159
| || || ||||||||||| ||| | |||||| | ||||| || || ||
Sbjct 395460 TACGGTGAGGAGTTTGAGGCTCTCTACGAGCAGTACGAGAAGGAGGGTCGTGGTCGCAAG 395401
Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218
|| | || | | |||| || ||| | ||||| | ||| ||| |||||||| |
Sbjct 395400 ACCA--TGAAGGCCCAGAAGCTATGGTATGCCATTCTCGAGGCCCAGACTGAGACTGGCA 395343
Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278
|| | ||| || |||||||| || || || || |||||||| || |||| |
Sbjct 395342 ACCCCTTCATGCTGTACAAGGACCACGCCAACCGGAAGAGCAACCAGAAGAACCTGGGTA 395283
Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319
||||| |||||||||| ||||| || || | ||||||
Sbjct 395282 CCATCCGAAGCTCCAATCTTTGCACTGAGATCATTGAGTAC 395242
>seq556
Length=684303
Score = 86.0 bits (94), Expect = 9e-12
Identities = 165/235 (70%), Gaps = 9/235 (4%)
Strand=Plus/Minus
Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125
|||||| ||||| ||||||||||| ||||||||| |||| | || || |||| || ||
Sbjct 380002 GGGCGACCTGGGCCCAGTGTACGGGTTCCAGTGGCGGCATTTCGGGGCCGAGTACGTCGA 379943
Query 70126 CTGCGAGA-CAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACT 70183
| |||| | | ||||| |||| ||||| || || || | || || | || |||
Sbjct 379942 C-GCGAAAGCCGACTACACGGGCCAGGGCGTCGACCAGCTGGCCGA-GGTGATCCACAAG 379885
Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243
|||||| ||| || || || | ||| | ||| || | ||||| || || || ||
Sbjct 379884 CTCAAGCACAACCCGTACGACCGGCGCATCATCATGAGCGCGTGGAACCCGGCCGACCTG 379825
Query 70244 CACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC---TCGTAC 70294
| | ||||| || || || || ||| ||||| || ||||||||| ||||||
Sbjct 379824 AAGAAGATGGCGCTGCCGCCTTGCCACATGTTT-GCGCAGTTTTACGTGTCGTAC 379771
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741050075708600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |