Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Diaporthe_20longicolla_20[genbank_20GCA_5F000800745.1_202014-12-11] 985 sequences; 64,714,568 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq279 140 5e-28 seq334 132 7e-26 seq556 86.0 9e-12 >seq279 Length=349471 Score = 140 bits (154), Expect = 5e-28 Identities = 203/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||| | | || ||||| ||||| | ||| ||| ||||||| Sbjct 263522 ATCTGGCAGATGTACAAGAAGCATGAAGCTTCCTTCTGGACTGCCGAGGAGATCGATCTC 263463 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||||||| |||| ||| | || |||| || || ||| | || | || Sbjct 263462 TCCAAGGACCTGCACGACTGGAGCAACCGCCTGACCGACGACGAACGATACTTCGTCTCC 263403 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||||| | |||||||| || | || ||||||||||||||||| || ||| || || Sbjct 263402 CACATCCTCGCCTTCTTCGCTGCTTCAGATGGAATCGTCAACGAGAACCTGGTGGAGCGC 263343 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | || ||||||| | ||||| ||||| ||||| |||||||| Sbjct 263342 TTCAGCGGCGAGGTTCAGATCCCAGAGGCGCGCTGCTTCTACGGCTTCCAGATCATGATG 263283 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 |||||| | ||||| || | |||||| || || |||| ||||| Sbjct 263282 GAGAACATCCACTCTGAGACGTACTCGCTTCTCATCGACACCTACAT 263236 Score = 134 bits (148), Expect = 2e-26 Identities = 342/512 (67%), Gaps = 25/512 (5%) Strand=Plus/Minus Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCT 125411 || |||| || || || ||||| | |||| | ||||||| | ||| | |||| Sbjct 263131 GTCCCGTGCATCCGCAAGAAGGCCGACTGGGCTCTCAAGTGGATCCAGGACCGCGAGTCC 263072 Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGT 125471 | |||||| | ||||||| || ||||| ||||| |||||||||||||| || Sbjct 263071 ACCTACGCCCAGCGACTGGTTGCCTTCGCTGCCGTCGAGGGCATCTTCTTCAGTGGCGCA 263012 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 || || | || || |||||||||||||| || |||||||| || ||||| | ||| Sbjct 263011 TTCGCCTCTATTTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTCTCCAAC 262952 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAA 125590 ||| | || ||||| || ||||| || ||| ||||| ||| ||| ||||| || || Sbjct 262951 GAGCTCATTTCTCGTGATGAGGGTCTGCACACCGACTTCGCCTGTCTCCTGTTCTCTCAC 262892 Query 125591 CT----ATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCG 125646 || | | ||| || || | ||||| || ||| ||||| | |||| Sbjct 262891 CTGAGGAAC--CGT-CCAAG----CAAGCAGCG-TGTCCAGGACATCA------TCACCG 262846 Query 125647 ATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCA 125706 | || || || || | ||||| | ||||| | || || | | | | |||| Sbjct 262845 AGGCTGTCGCCATTGAGAAGGAGTTCTTGACCGAGGCTCTGCCATGCGCCCTCCTCGGCA 262786 Query 125707 TGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGT 125766 |||||| ||| || ||| ||||||| |||||||| || || ||||| ||| || Sbjct 262785 TGAACTCCAACCTCATGAAGCAGTACATCGAGTTTGTTGCCGACCGTCTCCTGGTCGCTC 262726 Query 125767 TGATTGGC--CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATAT 125823 || ||| || ||| ||||||| | ||| ||||| || |||||| | ||| | Sbjct 262725 TG---GGCAACGAGAAGGTTTACAAGTCGTCGAACCCCTTCGACTTCATGGAGAACATCT 262669 Query 125824 CACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | || | || ||||||||||| || |||||| Sbjct 262668 CTCTCGGTGGCAAGACCAACTTCTTTGAGAAG 262637 >seq334 Length=742376 Score = 132 bits (146), Expect = 7e-26 Identities = 309/461 (67%), Gaps = 10/461 (2%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 |||||||| ||||| ||||| || || || || || | || ||||| | || || Sbjct 395697 CGATACGTCGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTCGCTATCTACCTTGAGCCA 395638 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 |||||||| || || || || ||| | || ||||||| || || || ||| Sbjct 395637 TGGCACGCCGATGTCTTCGAGTTTCTTGACCTGCGCAAGAATCACGGTAAGGAGGAGATC 395578 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC--- 97040 |||||| | || | || ||| |||||| | || ||| | ||||||||||| ||| Sbjct 395577 CGAGCCCGTGATCTTTTCCTTGCCCTCTGGATTCCCGATCTTTTCATGAAGCGGGTCGAG 395518 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 || |||||| |||||| ||| |||||||| || || || || || |||| ||| Sbjct 395517 AAGAACGGTG---ACTGGACCCTGATGTGCCCTAACGAGTGTCCTGGCCTCGCCGACTGC 395461 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAG 97159 | || || ||||||||||| ||| | |||||| | ||||| || || || Sbjct 395460 TACGGTGAGGAGTTTGAGGCTCTCTACGAGCAGTACGAGAAGGAGGGTCGTGGTCGCAAG 395401 Query 97160 ACGAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAA 97218 || | || | | |||| || ||| | ||||| | ||| ||| |||||||| | Sbjct 395400 ACCA--TGAAGGCCCAGAAGCTATGGTATGCCATTCTCGAGGCCCAGACTGAGACTGGCA 395343 Query 97219 CTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCA 97278 || | ||| || |||||||| || || || || |||||||| || |||| | Sbjct 395342 ACCCCTTCATGCTGTACAAGGACCACGCCAACCGGAAGAGCAACCAGAAGAACCTGGGTA 395283 Query 97279 CCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTAC 97319 ||||| |||||||||| ||||| || || | |||||| Sbjct 395282 CCATCCGAAGCTCCAATCTTTGCACTGAGATCATTGAGTAC 395242 >seq556 Length=684303 Score = 86.0 bits (94), Expect = 9e-12 Identities = 165/235 (70%), Gaps = 9/235 (4%) Strand=Plus/Minus Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125 |||||| ||||| ||||||||||| ||||||||| |||| | || || |||| || || Sbjct 380002 GGGCGACCTGGGCCCAGTGTACGGGTTCCAGTGGCGGCATTTCGGGGCCGAGTACGTCGA 379943 Query 70126 CTGCGAGA-CAGACTATTCGGGTCAGGGTGTTGATCA-ATTGCAGACAATCATTGACACT 70183 | |||| | | ||||| |||| ||||| || || || | || || | || ||| Sbjct 379942 C-GCGAAAGCCGACTACACGGGCCAGGGCGTCGACCAGCTGGCCGA-GGTGATCCACAAG 379885 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 |||||| ||| || || || | ||| | ||| || | ||||| || || || || Sbjct 379884 CTCAAGCACAACCCGTACGACCGGCGCATCATCATGAGCGCGTGGAACCCGGCCGACCTG 379825 Query 70244 CACCAAATGGCACTACCACCGTGTCAC-TGTTTGGCTCAGTTTTAC---TCGTAC 70294 | | ||||| || || || || ||| ||||| || ||||||||| |||||| Sbjct 379824 AAGAAGATGGCGCTGCCGCCTTGCCACATGTTT-GCGCAGTTTTACGTGTCGTAC 379771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050075708600